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IMGVR_UViG_3300005906_000005-3300005906-Ga0075127_10004189

Arc-Vir

IMGVR_UViG_3300005906_000005-3300005906-Ga0075127_10004189

Quality

84.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-59
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 50.0 3.95e-01 100.0% 33.0%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 51.0 3.85e-01 100.0% 30.3%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 50.0 3.42e-01 100.0% 20.2%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 48.0 3.30e-01 100.0% 19.6%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 48.0 3.30e-01 100.0% 19.9%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.72e-01 100.0% 90.9%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 46.0 3.18e-01 100.0% 19.5%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 47.0 3.52e-01 100.0% 27.5%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.69 47.0 4.03e-01 100.0% 44.7%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 45.0 3.48e-01 100.0% 30.0%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 44.0 3.06e-01 100.0% 18.7%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.67 55.0 3.94e-01 94.3% 67.3%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.66 58.0 4.32e-01 100.0% 87.7%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.66 56.0 3.94e-01 96.2% 65.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.18e-01 100.0% 86.2%
1d0nA05 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 42.0 3.51e-01 100.0% 36.5%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.64 42.0 3.35e-01 100.0% 32.1%
1d0nA02 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.62 39.0 3.12e-01 100.0% 30.0%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 53.0 3.51e-01 100.0% 24.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.60e-01 100.0% 70.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 49.0 3.47e-01 100.0% 29.3%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 3.83e-01 88.7% 95.0%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 49.0 3.74e-01 100.0% 39.7%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.82e-01 100.0% 41.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 48.0 4.05e-01 100.0% 53.3%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.77e-01 100.0% 39.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 50.0 4.48e-01 100.0% 68.4%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 42.0 2.64e-01 79.2% 28.0%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 49.0 4.03e-01 100.0% 62.1%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 50.0 3.65e-01 100.0% 36.4%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.61e-01 100.0% 36.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.83e-01 94.3% 91.0%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.73e-01 100.0% 40.9%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.72e-01 100.0% 51.8%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 49.0 3.37e-01 100.0% 28.8%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.56 40.0 4.07e-01 100.0% 83.7%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.23e-01 100.0% 25.6%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 49.0 3.40e-01 100.0% 30.9%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.40e-01 100.0% 33.7%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 48.0 3.32e-01 100.0% 29.6%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.44e-01 100.0% 35.3%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 3.42e-01 100.0% 34.2%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.70e-01 100.0% 72.9%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.45e-01 100.0% 36.2%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.39e-01 100.0% 34.6%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 3.65e-01 100.0% 45.1%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.48e-01 100.0% 85.9%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 42.0 2.88e-01 88.7% 44.2%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 46.0 3.34e-01 100.0% 82.1%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 43.0 3.22e-01 100.0% 50.6%
1yqsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 41.0 2.56e-01 88.7% 92.5%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 44.0 3.94e-01 94.3% 100.0%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 45.0 3.44e-01 100.0% 80.8%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 42.0 3.28e-01 96.2% 94.0%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 40.0 4.04e-01 84.9% 90.4%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.51 43.0 2.69e-01 100.0% 35.9%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 3.52e-01 100.0% 64.8%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.01e-01 100.0% 34.6%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 43.0 3.09e-01 100.0% 39.3%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.38e-01 100.0% 51.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4255735 101.1.9.98 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.72 50.0 3.75e-01 100.0% 31.2%
3390562 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.69 54.0 4.94e-01 100.0% 64.3%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.69 56.0 5.65e-01 100.0% 96.2%
4131213 4004.1.1.13 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PF31116 0.68 59.0 4.18e-01 100.0% 84.8%
3967527 4216.1.1.1 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.68 55.0 3.94e-01 92.5% 67.5%
4380236 4216.1.1.2 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.68 56.0 3.94e-01 94.3% 62.7%
3205216 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.68 42.0 3.27e-01 100.0% 28.7%
4030283 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.67 42.0 2.45e-01 100.0% 7.2%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 61.0 5.38e-01 100.0% 97.3%
140040 4216.1.1.3 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like 0.67 58.0 4.32e-01 100.0% 87.7%
3697266 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.66 41.0 3.36e-01 100.0% 33.0%
1758949 4216.1.1.1 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.65 54.0 4.13e-01 98.1% 80.9%
3799293 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 47.0 3.42e-01 100.0% 28.7%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.95e-01 100.0% 81.5%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.71e-01 100.0% 81.2%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.62 53.0 4.90e-01 100.0% 78.6%
4000177 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.62 48.0 4.08e-01 100.0% 51.1%
5060297 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.62 42.0 3.69e-01 100.0% 47.5%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.73e-01 100.0% 78.1%
3973570 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.61 51.0 3.69e-01 100.0% 82.4%
5034832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.71e-01 100.0% 88.6%
4354768 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 41.0 3.79e-01 100.0% 52.9%
4122369 56.1.1.2 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › PF27304 0.60 50.0 4.42e-01 100.0% 84.7%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.89e-01 100.0% 88.9%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 51.0 4.45e-01 100.0% 76.5%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.60 49.0 4.73e-01 100.0% 86.2%
3690350 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.01e-01 100.0% 80.8%
5080798 4.17.1.0 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.59 49.0 4.52e-01 100.0% 82.7%
3359554 10.1.1.3 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin 0.59 48.0 3.16e-01 94.3% 29.4%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.26e-01 100.0% 61.1%
4139778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 46.0 4.29e-01 100.0% 69.9%
3646691 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 51.0 3.55e-01 100.0% 32.4%
5024617 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 48.0 4.11e-01 100.0% 64.2%
5026284 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 48.0 4.08e-01 100.0% 64.2%
3787756 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 50.0 3.57e-01 100.0% 34.8%
4019128 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 50.0 3.41e-01 100.0% 30.5%
4496885 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.57 49.0 3.38e-01 100.0% 28.9%
4348615 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.57 49.0 3.39e-01 100.0% 29.7%
3744808 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 49.0 3.41e-01 100.0% 33.0%
3238303 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.35e-01 81.1% 92.7%
3364575 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 49.0 3.48e-01 100.0% 33.5%
3702149 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 48.0 3.48e-01 100.0% 43.8%
5003403 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.56 49.0 4.62e-01 100.0% 89.2%
3611087 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.56 48.0 3.76e-01 98.1% 97.4%
4994895 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.56 44.0 4.06e-01 100.0% 75.0%
4946183 243.6.1.12 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.55 44.0 4.01e-01 90.6% 76.0%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.55 47.0 3.66e-01 100.0% 96.0%
3279401 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.55 47.0 3.36e-01 100.0% 33.3%
3961663 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.55 47.0 3.83e-01 100.0% 56.2%
2866962 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 44.0 3.67e-01 100.0% 50.9%
4979291 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.54 43.0 4.00e-01 100.0% 68.0%
4059006 9.9.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.54 46.0 3.58e-01 100.0% 96.0%
1217791 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.54 46.0 3.30e-01 100.0% 31.6%
5047666 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.44e-01 100.0% 50.6%
3371543 109.4.1.1599 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.53 38.0 2.34e-01 100.0% 14.3%
3413627 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.53 42.0 3.30e-01 100.0% 41.8%
3587958 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.80e-01 100.0% 84.4%
3788010 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.52 42.0 3.48e-01 88.7% 91.6%
3328891 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.52 45.0 4.29e-01 100.0% 95.4%
5081122 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.51 45.0 3.65e-01 100.0% 87.0%
3378740 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.51 43.0 2.38e-01 100.0% 10.1%
5070290 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 34.0 2.74e-01 100.0% 31.2%