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IMGVR_UViG_3300005928_000055-3300005928-Ga0075105_10028044

Arc-Vir

IMGVR_UViG_3300005928_000055-3300005928-Ga0075105_10028044

Quality

74.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-89
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 47.0 3.91e-01 98.2% 39.6%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 51.0 4.91e-01 93.0% 68.8%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.70 46.0 3.79e-01 98.2% 37.9%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 50.0 3.97e-01 93.0% 37.9%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 49.0 3.64e-01 96.5% 29.7%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 51.0 3.79e-01 96.5% 32.0%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 55.0 4.53e-01 96.5% 70.2%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.64 55.0 4.18e-01 96.5% 66.2%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 3.75e-01 100.0% 36.8%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 3.51e-01 100.0% 35.8%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 55.0 4.54e-01 96.5% 93.8%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.61 54.0 3.94e-01 100.0% 49.4%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 46.0 3.59e-01 98.2% 35.8%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.27e-01 96.5% 63.6%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.60 53.0 3.89e-01 100.0% 38.7%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.60 52.0 3.97e-01 98.2% 53.0%
3glaA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 4.06e-01 96.5% 52.6%
4jdzA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 3.70e-01 98.2% 76.4%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 50.0 3.73e-01 96.5% 58.9%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 48.0 3.60e-01 98.2% 36.3%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.31e-01 100.0% 33.8%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 51.0 3.05e-01 98.2% 22.3%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 40.0 3.00e-01 93.0% 25.4%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 39.0 3.35e-01 91.2% 40.6%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.42e-01 98.2% 68.7%
4fbdA01 3.30.2310.50 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 0.58 45.0 3.76e-01 93.0% 53.5%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.57 47.0 3.49e-01 98.2% 72.5%
2pn5A10 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.57 49.0 3.72e-01 100.0% 66.4%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 3.24e-01 98.2% 29.9%
4ls9B02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 44.0 3.39e-01 94.7% 39.0%
2c1iA01 3.30.565.50 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.56 46.0 3.78e-01 93.0% 71.2%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.30e-01 100.0% 36.7%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.07e-01 98.2% 29.6%
3rgaA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.52e-01 100.0% 44.6%
3t5oA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.56 43.0 4.37e-01 96.5% 87.9%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.49e-01 98.2% 41.5%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.58e-01 98.2% 42.2%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 48.0 3.76e-01 100.0% 65.4%
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 3.50e-01 100.0% 52.0%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 46.0 3.96e-01 94.7% 80.2%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.04e-01 100.0% 28.2%
1q42A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.33e-01 98.2% 41.5%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.53 45.0 3.87e-01 100.0% 62.5%
5wl1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.71e-01 96.5% 67.3%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.52 38.0 3.25e-01 98.2% 43.6%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.25e-01 98.2% 38.3%
1a8rA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.52 41.0 3.23e-01 93.0% 70.6%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 36.0 3.00e-01 94.7% 35.8%
1viuC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 45.0 3.21e-01 100.0% 35.1%
3v9oA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.51 45.0 3.57e-01 100.0% 87.6%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.26e-01 98.2% 42.6%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.51 42.0 3.28e-01 98.2% 49.6%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.17e-01 98.2% 39.6%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.51 43.0 3.37e-01 100.0% 49.6%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 35.0 3.41e-01 100.0% 66.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3797650 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.81 53.0 4.36e-01 93.0% 39.0%
3764436 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.70 61.0 4.34e-01 100.0% 37.7%
4393122 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.70 46.0 3.58e-01 93.0% 31.2%
4350555 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.66 56.0 4.05e-01 98.2% 35.9%
3614913 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.65 55.0 4.95e-01 100.0% 69.4%
4400394 11.1.1.182 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.65 59.0 4.67e-01 100.0% 67.0%
3495218 922.1.1.9 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 0.65 51.0 5.35e-01 96.5% 100.0%
3611209 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 51.0 3.44e-01 100.0% 22.2%
3238560 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 56.0 4.18e-01 100.0% 44.8%
3226923 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 50.0 3.06e-01 100.0% 14.2%
3634938 11.1.4.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Transthyretin 0.62 54.0 4.00e-01 100.0% 72.9%
3212332 243.1.1.85 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.62 46.0 3.66e-01 96.5% 36.9%
3621948 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 53.0 3.92e-01 98.2% 84.5%
4440719 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 54.0 4.67e-01 98.2% 85.6%
5063415 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.62 53.0 4.12e-01 96.5% 69.6%
3416749 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.61 46.0 4.76e-01 94.7% 96.0%
3813764 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.61 53.0 3.99e-01 98.2% 42.9%
3484305 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.61 52.0 5.00e-01 98.2% 90.8%
3929482 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.61 52.0 3.83e-01 98.2% 35.6%
3471678 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.61 52.0 3.81e-01 100.0% 39.4%
3411811 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.61 45.0 4.61e-01 94.7% 87.3%
3169542 11.1.1.806 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IgD2_Trs65 0.61 51.0 3.92e-01 96.5% 68.1%
3578057 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.60 45.0 4.56e-01 94.7% 87.3%
3578603 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 45.0 4.06e-01 96.5% 58.7%
3512104 922.1.1.9 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 0.60 46.0 4.73e-01 94.7% 90.9%
3894313 11.1.5.116 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF26282 0.60 51.0 4.02e-01 96.5% 48.3%
3271559 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 50.0 3.91e-01 100.0% 98.5%
5029448 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 49.0 3.65e-01 100.0% 35.0%
3713700 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 50.0 3.56e-01 96.5% 56.5%
3470185 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 47.0 3.20e-01 98.2% 25.7%
5034001 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.57 49.0 4.33e-01 96.5% 83.1%
3286196 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 48.0 2.98e-01 100.0% 15.6%
3966482 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.57 42.0 3.26e-01 100.0% 33.6%
3516379 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 50.0 4.01e-01 98.2% 58.2%
3286059 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 50.0 3.53e-01 98.2% 98.9%
3807906 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.57 46.0 3.24e-01 98.2% 72.1%
4884000 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.57 44.0 3.31e-01 100.0% 32.7%
4940384 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 50.0 3.96e-01 98.2% 69.6%
1064199 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 44.0 3.48e-01 98.2% 40.5%
3618200 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.74e-01 96.5% 73.3%
4977218 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 46.0 2.92e-01 100.0% 51.0%
3242841 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.54 43.0 4.43e-01 96.5% 94.5%
3202616 883.1.1.20 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like 0.54 43.0 3.12e-01 100.0% 41.9%
3628545 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 45.0 2.92e-01 100.0% 47.9%
3942981 2484.1.1.269 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 0.54 43.0 2.66e-01 94.7% 14.1%
139114 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.54 40.0 2.96e-01 98.2% 26.9%
3547533 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.53 39.0 3.98e-01 96.5% 82.8%
3782298 243.1.1.14 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Mtr2 0.53 44.0 3.21e-01 98.2% 46.3%
3207181 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 43.0 3.84e-01 98.2% 63.3%
4957500 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.53 43.0 3.71e-01 93.0% 55.8%
4429744 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 46.0 3.88e-01 100.0% 76.8%
4328812 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 42.0 2.62e-01 93.0% 13.6%
3704007 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 45.0 3.03e-01 100.0% 40.4%
3341034 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.51 45.0 3.65e-01 100.0% 65.5%
3550168 4.8.1.27 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N 0.50 41.0 3.64e-01 94.7% 60.0%
5052814 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 37.0 2.49e-01 86.0% 85.1%