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IMGVR_UViG_3300005959_000001-3300005959-Ga0081534_10000967
Arc-VirIMGVR_UViG_3300005959_000001-3300005959-Ga0081534_10000967
Identity
- Kingdom:
- archaea
Quality
55.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-82
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 57.0 | 5.19e-01 | 80.6% | 91.7% |
| 5yixA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.76 | 62.0 | 3.84e-01 | 87.1% | 46.6% |
| 1lujB01 | 1.10.10.490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT | 0.71 | 51.0 | 5.39e-01 | 91.9% | 92.5% |
| 5mi7A03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.66 | 57.0 | 3.78e-01 | 98.4% | 59.5% |
| 4a64C03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.62 | 50.0 | 4.37e-01 | 93.5% | 68.0% |
| 1zc6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 45.0 | 3.44e-01 | 80.6% | 60.3% |
| 1fgmA05 | 1.20.245.10 | Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 | 0.61 | 42.0 | 2.62e-01 | 71.0% | 12.7% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 45.0 | 3.72e-01 | 80.6% | 53.0% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.60 | 49.0 | 4.23e-01 | 95.2% | 56.4% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 4.64e-01 | 91.9% | 94.4% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.58 | 46.0 | 3.81e-01 | 91.9% | 96.7% |
| 4f92B10 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.54 | 42.0 | 3.36e-01 | 91.9% | 86.7% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 40.0 | 3.72e-01 | 82.3% | 72.4% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.51 | 42.0 | 3.72e-01 | 96.8% | 82.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065059 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.76 | 58.0 | 5.75e-01 | 82.3% | 92.3% |
| 3940115 | 604.29.1.1 ↗ | alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N | 0.74 | 59.0 | 4.83e-01 | 87.1% | 96.5% |
| 3682134 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 62.0 | 6.31e-01 | 100.0% | 98.3% |
| 3545138 | 3990.1.1.3 ↗ | few secondary structure elements › Zinc finger domain in TOPLESS related protein 2 (TPR2) › Zinc finger domain in TOPLESS related protein 2 (TPR2) › Zinc finger domain in TOPLESS related protein 2 (TPR2) › WDR47_COR | 0.68 | 60.0 | 5.77e-01 | 100.0% | 92.9% |
| 3670388 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 58.0 | 4.55e-01 | 100.0% | 52.6% |
| 3520226 | 101.1.1.388 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › FLYWCH | 0.64 | 55.0 | 4.36e-01 | 100.0% | 46.9% |
| 3694087 | 3924.1.1.0 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 | 0.63 | 55.0 | 3.47e-01 | 100.0% | 61.0% |
| 3519277 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 51.0 | 5.23e-01 | 91.9% | 95.0% |
| 4929469 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.61 | 50.0 | 3.13e-01 | 96.8% | 60.8% |
| 3211566 | 185.1.3.0 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › GDNF receptor | 0.58 | 48.0 | 4.74e-01 | 90.3% | 86.2% |
| 11187 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.56 | 46.0 | 3.40e-01 | 91.9% | 44.4% |
D2
medium
residues 86-141