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IMGVR_UViG_3300005964_000014-3300005964-Ga0081529_12815436

Arc-Vir

IMGVR_UViG_3300005964_000014-3300005964-Ga0081529_12815436

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-47
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wpwA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.77 47.0 3.24e-01 95.6% 18.8%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 46.0 3.15e-01 97.8% 17.8%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.72 49.0 3.09e-01 71.1% 22.4%
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.71 58.0 4.06e-01 88.9% 32.1%
3zlaD01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.70 53.0 3.79e-01 100.0% 29.4%
4bs9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 47.0 2.98e-01 100.0% 15.6%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.68 49.0 3.39e-01 80.0% 52.1%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 48.0 2.84e-01 100.0% 10.2%
6n6qD00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 56.0 3.25e-01 100.0% 35.9%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.90e-01 84.4% 43.4%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.64 56.0 4.38e-01 100.0% 70.1%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 55.0 3.84e-01 100.0% 61.2%
2zovA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.63 55.0 3.70e-01 97.8% 86.7%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 3.82e-01 77.8% 50.7%
1bvyB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.61 54.0 3.09e-01 100.0% 34.9%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.61 51.0 3.89e-01 93.3% 87.6%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.61 52.0 3.27e-01 97.8% 45.7%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 48.0 3.04e-01 100.0% 35.0%
2idaA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 44.0 3.64e-01 82.2% 95.5%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.60 50.0 3.91e-01 95.6% 88.2%
4j4hA01 3.40.50.12150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 48.0 3.51e-01 93.3% 64.4%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 52.0 3.02e-01 100.0% 36.4%
2fnqA02 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.60 49.0 2.82e-01 97.8% 9.3%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 41.0 3.22e-01 75.6% 70.2%
3nx3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 49.0 3.45e-01 93.3% 46.1%
4ofzA03 3.30.70.3080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 3.98e-01 95.6% 92.1%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.59 46.0 3.48e-01 91.1% 64.2%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 51.0 3.26e-01 100.0% 32.9%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 3.96e-01 91.1% 60.8%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 4.02e-01 82.2% 87.2%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 50.0 3.79e-01 100.0% 44.0%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.56 43.0 3.35e-01 86.7% 63.3%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.56 41.0 4.10e-01 93.3% 84.3%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.55e-01 80.0% 53.8%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 48.0 3.54e-01 97.8% 42.1%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.39e-01 80.0% 88.5%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 41.0 3.20e-01 91.1% 87.7%
4k47A00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.52 42.0 2.88e-01 91.1% 43.2%
8ckpA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.51e-01 88.9% 79.1%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 39.0 3.09e-01 93.3% 40.7%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 43.0 3.08e-01 93.3% 30.9%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.51 42.0 3.24e-01 100.0% 38.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038671 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 68.0 6.66e-01 100.0% 100.0%
3797418 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 43.0 3.06e-01 97.8% 21.6%
4177935 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.69 48.0 3.56e-01 73.3% 40.9%
3503021 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.67 48.0 5.25e-01 75.6% 100.0%
3799834 3409.1.1.2 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › VPS38 0.67 47.0 3.31e-01 100.0% 23.4%
3789900 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.66 51.0 3.55e-01 100.0% 27.4%
5038830 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.66 57.0 4.46e-01 100.0% 48.0%
3952778 101.1.2.574 alpha arrays › HTH › HTH › winged helix domain › PF26520 0.65 46.0 3.74e-01 75.6% 40.0%
4463837 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.65 55.0 4.23e-01 97.8% 47.6%
5061180 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.65 54.0 4.38e-01 100.0% 49.5%
1921567 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.65 54.0 3.28e-01 100.0% 13.5%
3839942 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.64 56.0 3.26e-01 97.8% 26.9%
4970595 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.64 52.0 3.34e-01 100.0% 70.2%
5084051 375.8.1.7 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › TRAM 0.64 44.0 4.75e-01 73.3% 100.0%
3250581 3409.1.1.1 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › APG6 0.63 50.0 3.04e-01 88.9% 22.8%
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.63 43.0 4.35e-01 71.1% 75.0%
3612107 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.63 46.0 4.17e-01 77.8% 61.7%
3482645 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.63 42.0 4.66e-01 71.1% 94.3%
3484776 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 51.0 3.75e-01 91.1% 40.0%
5033222 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.62 52.0 4.08e-01 100.0% 44.8%
3965099 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 53.0 4.01e-01 95.6% 87.6%
223484 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 51.0 3.89e-01 93.3% 87.6%
4218376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 53.0 4.02e-01 95.6% 91.0%
3260247 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 48.0 3.97e-01 88.9% 73.5%
5031337 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.60 42.0 4.49e-01 75.6% 89.7%
3503283 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 40.0 4.08e-01 71.1% 75.6%
4049910 375.14.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.59 42.0 4.21e-01 91.1% 77.8%
4948719 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.59 43.0 3.33e-01 77.8% 38.0%
4930870 2007.1.1.21 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › PylD_N 0.58 47.0 3.59e-01 95.6% 71.7%
3839750 2003.1.15.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.58 51.0 3.29e-01 100.0% 63.8%
5063524 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.58 52.0 3.49e-01 100.0% 47.6%
3932590 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 2.77e-01 95.6% 14.2%
4976626 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.58 51.0 3.25e-01 100.0% 36.0%
3659833 2007.5.1.17 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.57 46.0 3.00e-01 100.0% 26.7%
4945305 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 41.0 3.47e-01 86.7% 42.4%
3672734 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.57 45.0 3.49e-01 93.3% 73.9%
4024218 101.46.1.0 alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain 0.57 43.0 3.39e-01 88.9% 38.0%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.56 48.0 2.75e-01 97.8% 16.8%
3365178 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 39.0 3.43e-01 73.3% 81.5%
3733350 2004.1.1.686 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, DEAD, Helicase_C 0.56 50.0 2.76e-01 100.0% 43.6%
4292319 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 49.0 2.74e-01 100.0% 18.4%
4998998 2007.1.1.21 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › PylD_N 0.56 44.0 3.32e-01 91.1% 74.2%
4928574 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.55 37.0 3.14e-01 71.1% 36.4%
4997112 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 46.0 3.39e-01 97.8% 55.4%
3914736 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 43.0 3.88e-01 88.9% 81.5%
3890078 4357.1.1.2 beta barrels › WWE domain › WWE domain › WWE domain › WWE_1 0.55 46.0 3.79e-01 95.6% 68.2%
5035680 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 47.0 3.17e-01 100.0% 48.3%
3920058 708.1.2.10 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 0.54 44.0 3.23e-01 97.8% 53.5%
3889228 386.1.1.66 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 0.54 42.0 3.63e-01 91.1% 56.4%
3880308 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 43.0 3.60e-01 88.9% 67.5%
3437522 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.54 43.0 3.30e-01 100.0% 86.4%
3550365 331.23.1.2 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.54 45.0 3.82e-01 95.6% 59.0%
4031209 2003.1.10.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Lant_dehydr_N 0.53 38.0 3.15e-01 82.2% 93.7%
3470449 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.53 41.0 3.49e-01 88.9% 67.5%
3269220 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.53 45.0 2.88e-01 100.0% 18.7%
3749060 4357.1.1.5 beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.52 41.0 3.43e-01 88.9% 61.3%
5071935 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.04e-01 93.3% 46.9%
5006876 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.15e-01 97.8% 37.2%