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IMGVR_UViG_3300005964_000089-3300005964-Ga0081529_12153511

Arc-Vir

IMGVR_UViG_3300005964_000089-3300005964-Ga0081529_12153511

Identity

Kingdom:
archaea

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-121
PDB
Domain cluster: rep: IMGVR_UViG_2504557009_000001-2504557009-2504595713__D4-113
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.75 71.0 6.38e-01 100.0% 98.0%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 39.0 4.00e-01 100.0% 56.5%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 37.0 4.42e-01 79.6% 90.7%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 39.0 3.46e-01 82.3% 45.4%
2l3bA00 2.60.40.2410 Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF12988, DUF3872 0.58 40.0 3.85e-01 71.7% 69.2%
1djxA03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 44.0 4.17e-01 80.5% 86.3%
4joxA00 2.60.270.50 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.54 39.0 3.91e-01 78.8% 73.7%
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 41.0 3.95e-01 82.3% 91.5%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.52 40.0 3.32e-01 79.6% 85.3%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.52 39.0 2.83e-01 78.8% 60.1%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 40.0 3.93e-01 80.5% 89.2%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 43.0 2.95e-01 92.0% 76.7%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.76e-01 82.3% 94.1%
1a2vA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 42.0 2.90e-01 92.0% 76.5%
3lh4A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.82e-01 78.8% 84.3%
3nmeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.69e-01 89.4% 85.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
150490 3123.1.1.1 ↗ a+b two layers › Nuclease AFV1-157 › Nuclease AFV1-157 › Nuclease AFV1-157 › DUF3258 0.76 72.0 6.43e-01 100.0% 96.1%
3393661 243.19.1.2 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › Chitin_bind_4 0.68 35.0 4.59e-01 73.5% 91.7%
3587587 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.65 47.0 4.79e-01 74.3% 84.5%
3732542 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.62 37.0 3.73e-01 78.8% 56.8%
146266 295.1.1.8 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.62 38.0 4.28e-01 78.8% 81.0%
5034706 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 37.0 4.46e-01 86.7% 93.3%
3818341 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.60 34.0 3.97e-01 76.1% 80.8%
3249212 12.2.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain 0.59 44.0 4.39e-01 77.9% 82.6%
4873102 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 41.0 3.95e-01 77.9% 80.8%
1849 11.1.5.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SdrG_C_C 0.55 49.0 4.15e-01 100.0% 90.1%
3219090 243.1.1.47 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5390 0.54 40.0 3.95e-01 77.9% 100.0%
3766606 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 41.0 3.83e-01 82.3% 91.7%
3609902 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 40.0 3.88e-01 79.6% 86.9%
3940428 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.53 40.0 2.81e-01 79.6% 99.2%
3602029 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.52 40.0 3.36e-01 96.5% 47.2%
3743240 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 32.0 3.69e-01 95.6% 90.7%
3482926 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.51 45.0 3.86e-01 96.5% 83.4%
3987211 5.1.3.134 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 0.50 43.0 2.83e-01 92.9% 89.5%
3185222 868.1.1.4 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › VTC 0.50 44.0 3.32e-01 100.0% 71.0%