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IMGVR_UViG_3300005977_000078-3300005977-Ga0081474_12090531

Arc-Vir

IMGVR_UViG_3300005977_000078-3300005977-Ga0081474_12090531

Identity

Kingdom:
archaea

Quality

82.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-64
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jjmA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.62 43.0 3.13e-01 73.4% 74.9%
1bvp103 1.10.170.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 0.61 41.0 3.58e-01 70.3% 58.3%
3gwnA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.58 41.0 3.40e-01 75.0% 54.0%
5f42A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.56 33.0 3.10e-01 96.9% 45.1%
6feaB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 44.0 3.51e-01 95.3% 87.7%
2lciA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.62e-01 96.9% 96.3%
3hwwA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.53 45.0 3.26e-01 100.0% 85.3%
1sovA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.51 43.0 3.21e-01 95.3% 78.5%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 44.0 3.58e-01 100.0% 50.8%
1powA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.50 43.0 3.17e-01 98.4% 84.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602498 604.17.1.1 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.71 45.0 4.66e-01 95.3% 68.3%
3182031 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 49.0 3.11e-01 100.0% 16.4%
5069997 606.1.1.1 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.65 60.0 4.99e-01 100.0% 74.3%
3392701 1128.1.1.3 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › UQCC2_CBP6 0.63 42.0 4.16e-01 70.3% 85.7%
4366692 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.61 43.0 3.99e-01 73.4% 68.8%
4027268 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.60 42.0 3.90e-01 75.0% 67.1%
4259228 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.59 44.0 3.65e-01 78.1% 97.3%
4365581 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.59 40.0 3.05e-01 70.3% 72.0%
3990854 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.58 53.0 4.66e-01 98.4% 95.6%
4259729 3755.3.1.295 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 0.57 51.0 3.94e-01 96.9% 87.4%
4660492 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.56 38.0 3.68e-01 70.3% 71.4%
3978922 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.55 39.0 3.10e-01 73.4% 85.9%
4028839 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.55 42.0 3.90e-01 81.2% 82.5%
5016076 1085.1.1.0 ↗ few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 0.55 42.0 3.68e-01 81.2% 62.1%
3603784 102.9.1.0 ↗ alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain 0.55 42.0 3.73e-01 81.2% 64.4%
4656362 618.2.1.0 ↗ a+b complex topology › DNA mimic protein DMP12-like › Immunity protein CdiI › Immunity protein CdiI 0.55 43.0 3.62e-01 96.9% 51.4%
4771694 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.53 45.0 3.62e-01 96.9% 96.3%
4039156 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 38.0 3.23e-01 76.6% 50.0%
3509224 109.4.1.59 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF383,DUF384 0.53 44.0 2.90e-01 100.0% 21.5%
3956466 7550.1.1.1 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.52 44.0 3.76e-01 98.4% 89.1%
3837821 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.52 43.0 3.01e-01 100.0% 77.2%
3429728 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.52 43.0 3.79e-01 100.0% 68.6%
3253225 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.51 44.0 4.09e-01 100.0% 78.8%
3369974 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.50 40.0 3.63e-01 85.9% 83.5%