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IMGVR_UViG_3300005977_000080-3300005977-Ga0081474_1287816
Arc-VirIMGVR_UViG_3300005977_000080-3300005977-Ga0081474_1287816
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 377-383_493-586
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.73 | 61.0 | 6.17e-01 | 93.1% | 88.2% |
| 1jadA00 | 1.20.1230.10 | Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain | 0.73 | 68.0 | 5.03e-01 | 100.0% | 82.6% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 59.0 | 5.96e-01 | 90.1% | 95.0% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 39.0 | 4.26e-01 | 89.1% | 70.2% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.65 | 48.0 | 4.74e-01 | 89.1% | 70.9% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 55.0 | 5.33e-01 | 90.1% | 96.4% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.65 | 46.0 | 4.98e-01 | 86.1% | 86.2% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 46.0 | 4.55e-01 | 93.1% | 69.2% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.64 | 60.0 | 5.88e-01 | 100.0% | 94.5% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 38.0 | 4.41e-01 | 85.1% | 83.6% |
| 3zciA00 | 1.20.58.1660 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 55.0 | 4.46e-01 | 100.0% | 99.0% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.60 | 56.0 | 5.48e-01 | 100.0% | 92.8% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 53.0 | 5.00e-01 | 98.0% | 82.6% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 51.0 | 5.21e-01 | 92.1% | 97.9% |
| 5mmjo00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.60 | 35.0 | 4.02e-01 | 77.2% | 78.7% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.60 | 46.0 | 4.72e-01 | 93.1% | 86.6% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 50.0 | 4.96e-01 | 100.0% | 86.1% |
| 2qr4A01 | 1.20.140.70 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain | 0.59 | 44.0 | 3.83e-01 | 88.1% | 51.3% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 44.0 | 4.41e-01 | 88.1% | 77.2% |
| 4cgkA01 | 6.10.250.3150 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 45.0 | 3.55e-01 | 96.0% | 38.3% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.58 | 41.0 | 4.39e-01 | 89.1% | 85.2% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 50.0 | 4.56e-01 | 100.0% | 71.3% |
| 1txdA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.57 | 49.0 | 3.76e-01 | 93.1% | 72.7% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.57 | 37.0 | 4.00e-01 | 76.2% | 77.6% |
| 5j1gA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 51.0 | 3.96e-01 | 100.0% | 45.2% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 47.0 | 4.72e-01 | 93.1% | 89.2% |
| 1quuA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 49.0 | 4.59e-01 | 100.0% | 77.0% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.56 | 41.0 | 3.83e-01 | 91.1% | 62.1% |
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 49.0 | 4.17e-01 | 98.0% | 82.1% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.55 | 42.0 | 4.01e-01 | 90.1% | 67.5% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 50.0 | 4.91e-01 | 99.0% | 98.1% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.54 | 47.0 | 3.32e-01 | 95.0% | 73.2% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 4.33e-01 | 96.0% | 86.0% |
| 1kmiZ02 | 1.10.287.500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 45.0 | 4.12e-01 | 93.1% | 75.4% |
| 1hciA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 46.0 | 4.36e-01 | 99.0% | 80.2% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.53 | 44.0 | 3.78e-01 | 91.1% | 55.5% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.52 | 45.0 | 4.25e-01 | 93.1% | 95.8% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.52 | 41.0 | 4.01e-01 | 85.1% | 100.0% |
| 1uurA01 | 1.20.58.240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 | 0.52 | 42.0 | 4.12e-01 | 89.1% | 81.8% |
| 2fgeA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 41.0 | 3.11e-01 | 87.1% | 57.2% |
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.51 | 40.0 | 4.28e-01 | 83.2% | 100.0% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 46.0 | 4.04e-01 | 100.0% | 86.7% |
| 4hhyC01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.50 | 42.0 | 3.86e-01 | 100.0% | 69.5% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.50 | 37.0 | 3.94e-01 | 96.0% | 92.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4281985 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.80 | 58.0 | 5.18e-01 | 93.1% | 54.3% |
| 4927650 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.74 | 60.0 | 4.35e-01 | 93.1% | 33.1% |
| 3404270 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 59.0 | 5.37e-01 | 93.1% | 70.0% |
| 3409567 | 3755.3.1.324 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 | 0.69 | 59.0 | 4.98e-01 | 93.1% | 77.0% |
| 3172946 | 601.19.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 | 0.63 | 58.0 | 4.76e-01 | 100.0% | 75.0% |
| 3619430 | 3777.1.1.1 ↗ | alpha bundles › Prolyl 4-hydroxylase alpha subunit dimerization domain › Prolyl 4-hydroxylase alpha subunit dimerization domain › Prolyl 4-hydroxylase alpha subunit dimerization domain › P4Ha_N | 0.62 | 51.0 | 4.57e-01 | 93.1% | 63.6% |
| 3221921 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.62 | 48.0 | 4.87e-01 | 88.1% | 82.0% |
| 4026286 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 54.0 | 4.95e-01 | 96.0% | 91.1% |
| 4936790 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.62 | 45.0 | 4.44e-01 | 90.1% | 71.4% |
| 3694634 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.62 | 52.0 | 3.57e-01 | 93.1% | 26.8% |
| 4470940 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.61 | 54.0 | 3.71e-01 | 97.0% | 40.9% |
| 3921192 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 55.0 | 5.28e-01 | 99.0% | 91.3% |
| 4879118 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.60 | 50.0 | 3.48e-01 | 93.1% | 27.7% |
| 3407923 | 192.24.1.1 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RPC3_helical | 0.60 | 47.0 | 4.75e-01 | 83.2% | 100.0% |
| 3626983 | 310.2.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MIX23 | 0.60 | 52.0 | 4.85e-01 | 95.0% | 88.7% |
| 3918068 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.59 | 51.0 | 4.89e-01 | 100.0% | 84.3% |
| 3412574 | 3291.1.1.82 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING | 0.59 | 50.0 | 4.62e-01 | 93.1% | 76.9% |
| 3422920 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.59 | 50.0 | 3.80e-01 | 93.1% | 39.6% |
| 3898349 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.58 | 52.0 | 4.01e-01 | 100.0% | 46.8% |
| 3577230 | 604.1.1.5 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3 | 0.58 | 51.0 | 5.07e-01 | 97.0% | 92.4% |
| 3969687 | 3755.3.1.461 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › MksF | 0.58 | 49.0 | 3.67e-01 | 93.1% | 58.1% |
| 4031283 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 48.0 | 4.15e-01 | 88.1% | 60.7% |
| 4960168 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.57 | 49.0 | 4.21e-01 | 95.0% | 70.9% |
| 3609437 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.57 | 46.0 | 4.13e-01 | 85.1% | 66.7% |
| 3704105 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.57 | 47.0 | 4.00e-01 | 88.1% | 75.6% |
| 3389546 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.57 | 40.0 | 4.45e-01 | 99.0% | 93.8% |
| 3503238 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.56 | 51.0 | 4.27e-01 | 100.0% | 95.3% |
| 3885014 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 48.0 | 4.58e-01 | 100.0% | 80.8% |
| 3201430 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 47.0 | 4.58e-01 | 99.0% | 85.5% |
| 3620806 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.55 | 46.0 | 3.99e-01 | 100.0% | 57.1% |
| 4016287 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 46.0 | 3.82e-01 | 90.1% | 57.1% |
| 3734418 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 48.0 | 3.41e-01 | 100.0% | 50.3% |
| 3611163 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.54 | 44.0 | 2.88e-01 | 96.0% | 19.8% |
| 3944931 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 44.0 | 4.65e-01 | 96.0% | 100.0% |
| 3571433 | 3939.1.1.220 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › KIF21A | 0.54 | 44.0 | 3.90e-01 | 93.1% | 58.7% |
| 4128138 | 604.12.1.4 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 | 0.54 | 46.0 | 3.95e-01 | 95.0% | 61.8% |
| 5056869 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 44.0 | 3.72e-01 | 92.1% | 70.3% |
| 4339446 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.53 | 47.0 | 3.37e-01 | 100.0% | 81.3% |
| 3469667 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 42.0 | 2.93e-01 | 93.1% | 44.3% |
| 4821107 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.52 | 47.0 | 3.32e-01 | 100.0% | 83.7% |
| 4175767 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.50 | 41.0 | 4.09e-01 | 88.1% | 82.9% |
D2
high
residues 393-489
Domain cluster:
rep: IMGVR_UViG_3300006181_000014-3300006181-Ga0079042_10008481__D147-237
D3
medium
residues 58-245
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20030.6 best | bpMoxR | 105.4 | 3.10e-30 | 95.2% | 68.3% |
| PF07728.21 | AAA_5 | 71.9 | 8.00e-20 | 83.5% | 99.3% |
D4
medium
residues 246-370
Domain cluster:
rep: IMGVR_UViG_3300006181_000014-3300006181-Ga0079042_10008481__D4-114