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IMGVR_UViG_3300005977_000103-3300005977-Ga0081474_1166053

Arc-Vir

IMGVR_UViG_3300005977_000103-3300005977-Ga0081474_1166053

Quality

50.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-91
PDB
D2 high residues 129-214
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.76 53.0 6.00e-01 87.2% 98.4%
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.69 51.0 5.60e-01 89.5% 100.0%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.69 55.0 5.13e-01 84.9% 96.2%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 48.0 4.49e-01 73.3% 88.6%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 50.0 4.68e-01 77.9% 94.4%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 46.0 4.63e-01 74.4% 87.5%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 51.0 4.77e-01 84.9% 87.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 33.0 3.55e-01 77.9% 56.2%
1ju2A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 53.0 3.54e-01 91.9% 73.5%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.61 46.0 4.95e-01 89.5% 98.6%
4z24A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 3.34e-01 91.9% 77.5%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 52.0 4.37e-01 100.0% 70.4%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 40.0 4.51e-01 94.2% 90.9%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 43.0 3.10e-01 87.2% 26.5%
6vddD01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 48.0 3.85e-01 91.9% 53.8%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 4.32e-01 94.2% 83.6%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 4.28e-01 93.0% 84.5%
3e1tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 3.25e-01 84.9% 43.4%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 40.0 4.37e-01 91.9% 88.7%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 39.0 3.35e-01 70.9% 75.5%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 40.0 2.96e-01 86.0% 27.3%
4u1qA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 49.0 3.86e-01 98.8% 78.1%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 49.0 3.73e-01 96.5% 86.2%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 39.0 2.71e-01 74.4% 80.7%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 38.0 3.36e-01 72.1% 90.8%
1ajoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.26e-01 86.0% 77.8%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 39.0 3.00e-01 77.9% 91.2%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 4.40e-01 97.7% 90.9%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 34.0 3.67e-01 77.9% 76.7%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 4.41e-01 100.0% 85.6%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 41.0 3.02e-01 84.9% 46.3%
6lkzC01 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 46.0 3.07e-01 100.0% 68.4%
1qdlA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.52 46.0 3.01e-01 100.0% 90.4%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 3.31e-01 89.5% 86.4%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.71e-01 84.9% 64.9%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.23e-01 86.0% 70.1%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.06e-01 100.0% 72.0%
2nxcA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 45.0 3.74e-01 98.8% 82.4%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 4.07e-01 100.0% 82.8%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 40.0 3.00e-01 86.0% 43.4%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.51 34.0 3.56e-01 75.6% 73.2%
4blqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.19e-01 100.0% 92.9%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.51 44.0 3.00e-01 100.0% 62.1%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 2.80e-01 89.5% 88.5%
7ovuA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.43e-01 98.8% 64.8%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 39.0 4.20e-01 83.7% 98.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014255 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.77 62.0 5.29e-01 86.0% 83.0%
4116360 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.75 51.0 5.89e-01 87.2% 100.0%
4443386 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.75 51.0 5.83e-01 94.2% 100.0%
3967396 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.74 54.0 5.99e-01 93.0% 100.0%
4500951 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.74 50.0 5.76e-01 91.9% 100.0%
2872794 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.74 54.0 5.55e-01 86.0% 81.5%
4215459 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.74 53.0 5.89e-01 91.9% 98.5%
4266955 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.74 52.0 5.83e-01 94.2% 98.5%
4646626 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.73 52.0 5.87e-01 88.4% 100.0%
4243001 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.72 52.0 5.78e-01 89.5% 100.0%
4592530 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.72 52.0 5.86e-01 87.2% 100.0%
4492912 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.72 53.0 5.73e-01 87.2% 94.3%
3777040 220.1.1.120 beta barrels › PH domain-like › PH domain-like › PH domain-like › GARIL_Rab2_bd 0.72 52.0 4.28e-01 75.6% 72.0%
3370226 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.72 51.0 5.75e-01 91.9% 98.5%
3664678 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.72 51.0 5.72e-01 91.9% 98.5%
4562140 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.72 48.0 5.56e-01 94.2% 100.0%
3539273 220.1.1.120 beta barrels › PH domain-like › PH domain-like › PH domain-like › GARIL_Rab2_bd 0.72 51.0 4.25e-01 74.4% 79.3%
4164648 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.71 54.0 5.86e-01 88.4% 98.6%
4533523 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.70 51.0 5.68e-01 93.0% 100.0%
3407757 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 51.0 4.40e-01 77.9% 65.4%
4073869 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.68 51.0 5.58e-01 87.2% 100.0%
4534864 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.67 51.0 5.50e-01 93.0% 98.6%
4583417 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.67 48.0 5.36e-01 91.9% 100.0%
4517759 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.67 48.0 5.39e-01 87.2% 100.0%
3258360 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 5.27e-01 93.0% 81.9%
4536182 220.1.1.93 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_6 0.66 49.0 4.01e-01 77.9% 70.3%
3620221 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 56.0 5.23e-01 97.7% 89.1%
3022412 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 48.0 4.04e-01 86.0% 47.9%
3237942 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 57.0 4.93e-01 100.0% 72.6%
4494033 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.62 48.0 5.24e-01 90.7% 100.0%
4486443 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.62 48.0 4.93e-01 90.7% 88.7%
5069377 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.62 54.0 3.37e-01 100.0% 36.9%
3832622 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.61 43.0 2.92e-01 72.1% 97.8%
4443818 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.61 49.0 3.15e-01 87.2% 38.2%
3407758 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 52.0 4.73e-01 97.7% 69.6%
4987289 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 53.0 3.36e-01 100.0% 37.5%
2100847 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 4.71e-01 90.7% 91.4%
2392884 227.1.1.14 a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C 0.60 44.0 3.96e-01 77.9% 94.2%
4238238 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 50.0 3.61e-01 98.8% 72.6%
3263649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.19e-01 89.5% 60.8%
4544219 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.58 50.0 3.62e-01 98.8% 75.0%
4117409 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.57 41.0 2.59e-01 75.6% 43.6%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.57 39.0 3.34e-01 72.1% 76.0%
3235997 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.57 38.0 4.08e-01 98.8% 80.0%
2140746 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.56 49.0 3.63e-01 97.7% 83.1%
None 0.56 48.0 3.48e-01 98.8% 68.6%
3939412 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.81e-01 97.7% 90.5%
5019216 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.56 48.0 3.77e-01 98.8% 75.4%
2114533 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.55 47.0 3.49e-01 97.7% 90.8%
3823929 220.1.1.163 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.55 48.0 4.32e-01 97.7% 74.2%
3629522 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 41.0 3.92e-01 98.8% 68.0%
3348812 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 40.0 3.33e-01 75.6% 66.9%
4961185 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 41.0 3.83e-01 84.9% 64.8%
3381251 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 39.0 4.11e-01 76.7% 86.3%
3285086 3268.1.1.0 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.53 43.0 4.55e-01 87.2% 100.0%
None 0.51 44.0 3.24e-01 100.0% 72.0%
4262428 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.51 36.0 2.54e-01 76.7% 78.1%
3974590 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.50 44.0 3.69e-01 98.8% 68.0%
3291440 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 39.0 3.65e-01 84.9% 89.1%