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IMGVR_UViG_3300006090_000037-3300006090-Ga0082015_10003553

Arc-Vir

IMGVR_UViG_3300006090_000037-3300006090-Ga0082015_10003553

Identity

Kingdom:
archaea

Quality

90.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-104
PDB
Domain cluster: rep: PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00349__D21-108
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.65 47.0 3.78e-01 80.0% 40.7%
1qmnA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.64 45.0 3.94e-01 72.6% 75.0%
2r9yA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.64 45.0 3.84e-01 72.6% 69.9%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.64 52.0 4.52e-01 90.5% 79.6%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 43.0 3.71e-01 75.8% 78.0%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 4.50e-01 74.7% 90.7%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 42.0 3.42e-01 76.8% 41.3%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 38.0 3.40e-01 86.3% 48.1%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 3.01e-01 85.3% 36.4%
3tufB00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.55 47.0 3.90e-01 92.6% 54.4%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.55 44.0 4.08e-01 86.3% 72.9%
4ds2B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 47.0 4.02e-01 96.8% 75.6%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 43.0 3.21e-01 88.4% 92.4%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.72e-01 84.2% 48.4%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 41.0 3.47e-01 84.2% 76.8%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 43.0 4.06e-01 91.6% 87.6%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 38.0 2.68e-01 75.8% 29.1%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 42.0 3.01e-01 88.4% 56.2%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 40.0 2.89e-01 80.0% 68.2%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 3.11e-01 92.6% 40.6%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 36.0 3.10e-01 76.8% 45.6%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 40.0 3.46e-01 81.1% 62.5%
3a5vA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 39.0 3.94e-01 85.3% 90.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620679 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.64 59.0 4.65e-01 100.0% 58.4%
3261416 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.62 48.0 4.22e-01 82.1% 72.1%
3576406 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.61 42.0 3.72e-01 83.2% 48.6%
4142511 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.60 41.0 2.67e-01 70.5% 26.3%
3622600 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 41.0 3.78e-01 80.0% 53.6%
3230405 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 40.0 2.69e-01 83.2% 16.4%
3990451 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 42.0 2.91e-01 81.1% 21.9%
5065609 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.59 48.0 4.64e-01 89.5% 100.0%
4023238 220.1.1.195 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_fung_RdRP 0.56 41.0 3.43e-01 76.8% 62.4%
3462291 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.56 44.0 3.08e-01 84.2% 42.4%
4029832 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 39.0 3.00e-01 73.7% 62.0%
3196761 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.55 37.0 3.53e-01 90.5% 60.6%
3630950 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.54 44.0 3.14e-01 87.4% 81.4%
5026682 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.54 44.0 4.32e-01 88.4% 85.4%
4212114 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.53 44.0 3.59e-01 88.4% 64.0%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.53 40.0 3.87e-01 80.0% 77.3%
3575714 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.53 45.0 2.97e-01 92.6% 26.6%
2103527 11.1.1.344 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_56 0.53 40.0 4.08e-01 81.1% 90.3%
3783250 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.53 45.0 3.12e-01 95.8% 29.1%
3573748 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 3.24e-01 90.5% 58.4%
3801119 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 42.0 2.94e-01 86.3% 45.1%
3578619 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.52 40.0 3.93e-01 83.2% 97.1%
3795181 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.52 43.0 2.79e-01 89.5% 34.3%
2420861 3435.1.1.2 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.52 42.0 3.80e-01 89.5% 65.4%
136152 12.1.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.51 39.0 3.93e-01 85.3% 90.0%
3628642 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.90e-01 93.7% 29.0%
450 2.9.1.0 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like 0.51 42.0 2.80e-01 91.6% 74.1%
5021930 4312.1.1.22 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › PF27370 0.50 35.0 3.46e-01 71.6% 98.0%