Back to structures

IMGVR_UViG_3300006090_000140-3300006090-Ga0082015_100005412

Arc-Vir

IMGVR_UViG_3300006090_000140-3300006090-Ga0082015_100005412

Quality

94.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-69
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 39.0 3.39e-01 84.1% 94.7%
5um2A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 42.0 3.22e-01 92.8% 80.0%
D2 medium residues 70-128
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 4.82e-01 94.9% 79.6%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.82e-01 88.1% 95.7%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.64e-01 89.8% 87.2%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.61e-01 94.9% 72.1%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.40e-01 94.9% 76.6%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.52e-01 94.9% 83.5%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.29e-01 89.8% 64.4%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.60e-01 94.9% 87.7%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.48e-01 96.6% 85.7%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.48e-01 94.9% 74.4%
1x1aA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 3.60e-01 96.6% 36.7%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.38e-01 94.9% 87.2%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 48.0 4.30e-01 96.6% 79.3%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.18e-01 94.9% 71.0%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.12e-01 94.9% 65.3%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.23e-01 96.6% 68.5%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.27e-01 93.2% 92.7%
2v9vA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.42e-01 96.6% 100.0%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 3.85e-01 91.5% 54.3%
1lvaA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.58e-01 93.2% 100.0%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.29e-01 96.6% 90.0%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.12e-01 86.4% 93.1%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.56 46.0 3.38e-01 94.9% 59.4%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 47.0 4.20e-01 98.3% 87.4%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.70e-01 94.9% 50.0%
1dtnA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.56 39.0 2.67e-01 89.8% 19.1%
2je6I01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 36.0 3.68e-01 76.3% 67.2%
1fokA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.13e-01 94.9% 73.6%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.02e-01 93.2% 92.0%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.38e-01 96.6% 91.8%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.55 44.0 3.96e-01 94.9% 85.4%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 4.02e-01 93.2% 82.1%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.29e-01 94.9% 91.2%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.18e-01 98.3% 84.4%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.31e-01 96.6% 90.0%
1scmB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 43.0 4.21e-01 93.2% 94.1%
7koeD01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.10e-01 86.4% 45.5%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.84e-01 96.6% 69.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.35e-01 94.9% 50.4%
5c4iB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 33.0 3.28e-01 89.8% 60.7%
2q83B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.21e-01 79.7% 70.7%
4fe9A03 2.60.40.3620 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.09e-01 78.0% 77.3%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.51 41.0 2.91e-01 100.0% 26.1%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.65e-01 96.6% 69.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3357833 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.68 55.0 4.97e-01 88.1% 83.7%
3358560 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.67 55.0 5.08e-01 89.8% 92.0%
4946496 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 5.55e-01 96.6% 86.2%
3621304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.80e-01 89.8% 81.2%
4112271 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.91e-01 89.8% 76.0%
3489856 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.91e-01 94.9% 87.5%
5074035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.91e-01 81.4% 81.7%
4390915 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.37e-01 91.5% 52.7%
5015489 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.65 53.0 3.13e-01 91.5% 11.8%
5039517 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 5.18e-01 94.9% 94.3%
4039627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 53.0 3.78e-01 91.5% 32.2%
4958613 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.53e-01 94.9% 65.0%
4004874 101.1.2.104 alpha arrays › HTH › HTH › winged helix domain › SelB-wing_3 0.63 53.0 5.06e-01 94.9% 89.9%
4991793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 3.63e-01 94.9% 27.6%
4966206 7523.1.1.3 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.63 47.0 3.38e-01 81.4% 89.9%
4966661 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.62 52.0 4.78e-01 94.9% 81.0%
4968863 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 5.34e-01 100.0% 98.5%
5072470 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.72e-01 94.9% 85.0%
4961394 7523.1.1.3 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.61 46.0 3.30e-01 83.1% 93.1%
3412839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.68e-01 91.5% 94.7%
3340651 101.1.2.69 alpha arrays › HTH › HTH › winged helix domain › La 0.61 53.0 4.65e-01 100.0% 86.7%
5030772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 4.73e-01 74.6% 100.0%
4931105 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 3.86e-01 89.8% 44.8%
5070233 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.25e-01 89.8% 57.8%
4988663 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.60 51.0 4.54e-01 94.9% 69.4%
4945430 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.24e-01 89.8% 58.9%
5073482 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.55e-01 88.1% 75.7%
4970540 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.32e-01 94.9% 73.7%
5073215 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.38e-01 93.2% 64.4%
5042580 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.63e-01 94.9% 76.2%
3805792 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.60 52.0 4.72e-01 96.6% 85.0%
4219206 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 3.43e-01 94.9% 25.8%
5064577 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 3.96e-01 94.9% 49.2%
4315754 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.16e-01 94.9% 55.8%
3982788 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.60 51.0 4.86e-01 94.9% 82.9%
5081885 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.57e-01 93.2% 81.2%
3224625 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.60 49.0 4.56e-01 91.5% 82.7%
3413051 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.60 49.0 4.80e-01 93.2% 98.5%
3390907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.48e-01 94.9% 78.6%
None 0.59 47.0 4.39e-01 94.9% 90.0%
4997786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.44e-01 94.9% 77.6%
3290288 101.1.2.371 alpha arrays › HTH › HTH › winged helix domain › nSTAND1 0.59 50.0 4.25e-01 96.6% 73.0%
4955343 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.59 43.0 3.12e-01 79.7% 30.6%
4929625 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 3.95e-01 94.9% 53.3%
5056656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.85e-01 89.8% 48.2%
4974839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.59e-01 93.2% 43.3%
5052967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.32e-01 89.8% 31.9%
5052187 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.03e-01 94.9% 58.1%
5027661 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.58 47.0 3.92e-01 96.6% 67.8%
5076494 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 47.0 4.38e-01 96.6% 87.5%
5006346 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.57 48.0 4.12e-01 94.9% 69.5%
5056343 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.66e-01 91.5% 67.2%
5013195 101.1.2.948 alpha arrays › HTH › HTH › winged helix domain › PF27297 0.57 47.0 4.37e-01 93.2% 92.0%
4961539 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.57 48.0 4.46e-01 96.6% 80.0%
3593687 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.55e-01 96.6% 82.9%
5074322 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.30e-01 94.9% 94.9%
3286728 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 3.96e-01 96.6% 89.5%
4940640 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.89e-01 96.6% 67.3%
5073405 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.01e-01 94.9% 80.0%
5044560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.19e-01 98.3% 31.3%
3281254 101.1.2.741 alpha arrays › HTH › HTH › winged helix domain › DUF7059 0.56 41.0 3.71e-01 81.4% 96.5%
5054231 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.30e-01 94.9% 81.3%
5009797 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 45.0 3.69e-01 94.9% 50.8%
4930547 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.77e-01 83.1% 71.2%
4226054 2003.1.5.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CheR 0.54 42.0 2.99e-01 86.4% 36.9%
4980207 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 3.56e-01 91.5% 47.5%
3448909 101.1.2.33 alpha arrays › HTH › HTH › winged helix domain › TFIIE_beta 0.54 45.0 3.85e-01 100.0% 59.0%
3602298 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.87e-01 93.2% 72.2%
5053259 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.54 44.0 4.11e-01 94.9% 86.7%
3955786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.37e-01 98.3% 90.0%
5013330 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 3.89e-01 93.2% 83.3%
3979805 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.54 45.0 4.46e-01 100.0% 90.8%
3453675 101.1.2.304 alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.54 45.0 3.68e-01 96.6% 49.6%
3485402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 4.53e-01 100.0% 100.0%
3483046 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 4.22e-01 89.8% 90.0%
4010642 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.51 40.0 3.84e-01 89.8% 82.9%
3944078 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.93e-01 94.9% 84.3%