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IMGVR_UViG_3300006090_000362-3300006090-Ga0082015_100054815

Arc-Vir

IMGVR_UViG_3300006090_000362-3300006090-Ga0082015_100054815

Identity

Kingdom:
archaea

Quality

64.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-78
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.68 51.0 5.09e-01 92.4% 79.1%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 44.0 3.73e-01 77.3% 95.3%
5b57B00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.59 51.0 3.30e-01 100.0% 70.4%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 50.0 4.14e-01 100.0% 55.1%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 49.0 3.36e-01 92.4% 44.9%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 40.0 3.38e-01 71.2% 62.3%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 43.0 3.28e-01 75.8% 88.3%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.58 40.0 2.82e-01 71.2% 38.5%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 36.0 3.83e-01 90.9% 74.5%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 47.0 3.88e-01 97.0% 48.9%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 47.0 2.95e-01 93.9% 16.5%
3kd9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.26e-01 90.9% 34.1%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.47e-01 78.8% 78.9%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 32.0 3.13e-01 98.5% 49.3%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 39.0 3.82e-01 83.3% 73.6%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 2.97e-01 75.8% 44.4%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 3.58e-01 89.4% 74.3%
3ewmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 43.0 2.82e-01 92.4% 34.9%
3oc4B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.24e-01 97.0% 91.8%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 44.0 3.84e-01 100.0% 63.9%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.46e-01 72.7% 100.0%
3we0A03 1.10.405.40 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › 0.51 37.0 3.08e-01 83.3% 60.6%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.50 44.0 2.99e-01 98.5% 95.6%
4gqoA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 43.0 3.09e-01 98.5% 61.6%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 40.0 3.13e-01 98.5% 89.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5031480 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.71 49.0 3.26e-01 71.2% 34.1%
2388307 4.16.1.1 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like › Strep_his_triad 0.65 40.0 3.92e-01 92.4% 56.3%
5071748 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.64 41.0 3.95e-01 75.8% 57.3%
4370368 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.63 49.0 3.18e-01 89.4% 75.3%
5082662 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.61 50.0 3.58e-01 92.4% 90.0%
3584393 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.60 38.0 2.85e-01 100.0% 27.0%
3377613 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 51.0 4.39e-01 100.0% 89.1%
3988598 4.16.1.1 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like › Strep_his_triad 0.59 37.0 3.77e-01 90.9% 63.1%
3988577 4.16.1.1 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like › Strep_his_triad 0.59 35.0 3.70e-01 90.9% 65.0%
5018158 101.1.2.886 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF790 0.58 46.0 3.90e-01 90.9% 52.7%
3988565 4.16.1.0 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like 0.58 35.0 3.96e-01 98.5% 86.7%
3386289 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.58 51.0 4.77e-01 98.5% 93.8%
4039616 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 48.0 3.63e-01 92.4% 75.0%
3415741 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 39.0 3.06e-01 71.2% 84.1%
4048893 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.57 37.0 3.67e-01 77.3% 62.9%
None — 0.57 46.0 2.85e-01 100.0% 15.3%
5073392 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.56 39.0 3.44e-01 71.2% 56.8%
3595430 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 49.0 3.52e-01 100.0% 67.0%
4202176 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.55 42.0 3.04e-01 81.8% 84.7%
3493963 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 38.0 3.31e-01 72.7% 87.0%
3927894 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 45.0 3.52e-01 89.4% 84.4%
3239406 604.29.1.1 ↗ alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.54 44.0 3.64e-01 89.4% 76.5%
3724159 4952.1.1.2 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic 0.54 38.0 2.56e-01 74.2% 47.7%
3900629 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.53 45.0 3.72e-01 100.0% 73.1%
4471483 604.29.1.1 ↗ alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.53 43.0 3.55e-01 89.4% 72.5%
3906078 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.42e-01 78.8% 73.0%
4029951 220.1.1.310 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29397, PF29398 0.53 37.0 2.95e-01 75.8% 51.7%
3282977 300.1.1.12 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.52 38.0 2.85e-01 80.3% 30.2%
3622481 604.29.1.1 ↗ alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.52 42.0 3.53e-01 89.4% 76.5%
4967892 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.52 36.0 3.44e-01 72.7% 74.7%
4614257 2002.1.1.291 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM-barrel_MTC6 0.52 40.0 2.70e-01 92.4% 84.5%
4316390 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.52 31.0 3.13e-01 98.5% 56.9%
4935756 242.2.1.0 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.51 34.0 3.64e-01 93.9% 81.8%
4945225 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 43.0 3.11e-01 98.5% 77.6%
4029784 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.50 40.0 2.59e-01 86.4% 23.9%
5068028 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.50 42.0 2.91e-01 92.4% 48.0%