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IMGVR_UViG_3300006204_000297-3300006204-Ga0081182_100052912

Arc-Vir

IMGVR_UViG_3300006204_000297-3300006204-Ga0081182_100052912

Quality

75.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.72 48.0 5.23e-01 100.0% 83.3%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 50.0 5.23e-01 100.0% 80.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 52.0 5.15e-01 100.0% 73.7%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 50.0 5.15e-01 100.0% 83.1%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 51.0 5.05e-01 100.0% 78.9%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.65 36.0 2.85e-01 100.0% 26.6%
5cadA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 39.0 2.92e-01 100.0% 24.2%
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.62 37.0 3.94e-01 98.6% 66.2%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.62 49.0 4.67e-01 98.6% 72.9%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.62 41.0 3.59e-01 100.0% 43.1%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.61 43.0 3.71e-01 100.0% 47.7%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 40.0 3.62e-01 100.0% 49.0%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 43.0 3.93e-01 100.0% 56.4%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.59 41.0 3.62e-01 100.0% 48.2%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 35.0 3.08e-01 100.0% 37.5%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.59 50.0 3.76e-01 98.6% 42.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.59 42.0 4.19e-01 97.3% 72.7%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 3.94e-01 100.0% 60.0%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 37.0 3.21e-01 100.0% 39.8%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.58 50.0 3.61e-01 100.0% 36.0%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.58 50.0 4.18e-01 100.0% 73.3%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 41.0 3.24e-01 100.0% 34.2%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.58 50.0 4.05e-01 100.0% 74.5%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.99e-01 98.6% 59.6%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 35.0 2.75e-01 100.0% 26.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 34.0 3.35e-01 100.0% 52.6%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 3.70e-01 100.0% 58.1%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 37.0 3.69e-01 100.0% 63.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 3.24e-01 100.0% 30.4%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.43e-01 100.0% 45.1%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.12e-01 100.0% 43.4%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.54 48.0 4.15e-01 100.0% 74.4%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.54 48.0 4.24e-01 100.0% 80.2%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 3.32e-01 87.7% 94.4%
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 45.0 4.05e-01 100.0% 79.8%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 47.0 3.29e-01 100.0% 86.0%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.20e-01 100.0% 40.1%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 38.0 3.00e-01 100.0% 32.4%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 38.0 3.34e-01 100.0% 48.8%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 40.0 3.15e-01 86.3% 81.1%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 38.0 3.03e-01 100.0% 34.5%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.51 37.0 3.49e-01 76.7% 64.8%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.19e-01 83.6% 54.8%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 43.0 3.21e-01 100.0% 49.0%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 43.0 2.94e-01 100.0% 25.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.80 60.0 6.17e-01 100.0% 82.9%
3965010 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.77 54.0 5.06e-01 100.0% 60.0%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 54.0 5.76e-01 100.0% 87.5%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 55.0 5.29e-01 100.0% 69.9%
1442393 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 54.0 4.75e-01 100.0% 53.2%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 53.0 4.63e-01 100.0% 51.9%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 53.0 4.66e-01 100.0% 53.3%
223776 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.72 50.0 5.13e-01 100.0% 76.1%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 53.0 5.08e-01 100.0% 68.2%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 52.0 4.64e-01 100.0% 55.4%
4128974 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 55.0 5.36e-01 100.0% 76.2%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 51.0 5.73e-01 100.0% 100.0%
4084879 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 55.0 5.23e-01 100.0% 71.8%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 52.0 5.06e-01 100.0% 71.2%
5023972 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 47.0 4.48e-01 100.0% 58.8%
3688945 11.1.1.644 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.70 49.0 4.20e-01 100.0% 46.1%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.70 53.0 5.59e-01 100.0% 90.8%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 51.0 5.48e-01 98.6% 98.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 50.0 4.97e-01 100.0% 77.3%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 50.0 4.40e-01 100.0% 53.7%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 50.0 5.41e-01 97.3% 100.0%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 50.0 4.97e-01 100.0% 77.3%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 51.0 4.57e-01 100.0% 57.7%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 50.0 5.01e-01 100.0% 78.7%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 50.0 5.37e-01 98.6% 100.0%
3668699 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 48.0 4.73e-01 100.0% 71.2%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 48.0 4.95e-01 100.0% 82.9%
2512518 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 48.0 4.39e-01 100.0% 57.4%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 50.0 5.33e-01 100.0% 96.8%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 49.0 4.75e-01 100.0% 70.6%
3259237 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 58.0 5.67e-01 100.0% 93.8%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 46.0 4.55e-01 100.0% 69.6%
4974839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 56.0 4.38e-01 98.6% 99.3%
3220022 382.1.1.27 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF7773 0.62 53.0 4.59e-01 100.0% 61.0%
3999001 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.61 49.0 4.33e-01 100.0% 60.0%
4003316 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.61 49.0 4.11e-01 100.0% 51.2%
3994984 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 48.0 5.08e-01 100.0% 98.5%
4332626 3532.1.1.0 alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase 0.59 45.0 2.70e-01 100.0% 10.4%
3490255 11.1.4.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 0.59 39.0 3.61e-01 100.0% 50.0%
4978692 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.59 47.0 3.15e-01 87.7% 99.0%
3204836 2492.1.1.32 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam 0.59 46.0 3.63e-01 100.0% 40.0%
3905094 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 49.0 4.07e-01 100.0% 51.1%
3933347 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 38.0 3.56e-01 100.0% 51.6%
1871008 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.57 37.0 3.34e-01 100.0% 46.2%
3382614 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 50.0 2.99e-01 100.0% 20.2%
3290753 303.1.1.3 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 0.57 47.0 4.12e-01 100.0% 59.6%
5005105 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 47.0 4.43e-01 100.0% 100.0%
3260499 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.76e-01 100.0% 55.0%
3531341 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 36.0 3.57e-01 100.0% 63.7%
3757469 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.48e-01 100.0% 60.0%
3787437 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.53 42.0 2.67e-01 86.3% 46.0%
3581212 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 44.0 3.74e-01 100.0% 53.8%
3900025 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 43.0 4.40e-01 100.0% 94.3%
5000210 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.52 46.0 4.00e-01 97.3% 86.4%
4947414 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.58e-01 100.0% 55.8%
3484366 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.51 44.0 4.01e-01 100.0% 100.0%
1427511 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.51 43.0 2.74e-01 95.9% 82.5%
3315951 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.50 44.0 4.37e-01 100.0% 98.7%