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IMGVR_UViG_3300006204_000297-3300006204-Ga0081182_100052921
Arc-VirIMGVR_UViG_3300006204_000297-3300006204-Ga0081182_100052921
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-61
Domain cluster:
rep: ON464759.1__UTV60862.1__JDFnp1_74__00074__D5-72
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12844.14 best | HTH_19 | 35.3 | 1.20e-08 | 96.7% | 81.2% |
| PF13560.13 | HTH_31 | 35.7 | 1.20e-08 | 95.1% | 79.7% |
| PF13443.13 | HTH_26 | 36.3 | 7.60e-09 | 93.4% | 92.1% |
| PF01381.29 | HTH_3 | 62.3 | 4.80e-17 | 90.2% | 98.2% |
D2
high
residues 70-230
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06114.20 best | Peptidase_M78 | 32.1 | 1.30e-07 | 48.4% | 68.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950654 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.86 | 61.0 | 5.76e-01 | 72.7% | 61.6% |
| 3989086 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.83 | 58.0 | 5.42e-01 | 70.8% | 61.1% |
| 3953551 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.82 | 65.0 | 6.02e-01 | 88.2% | 66.5% |
| 5083216 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.78 | 73.0 | 7.05e-01 | 100.0% | 96.7% |
| 3953982 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.69 | 58.0 | 5.22e-01 | 91.3% | 66.2% |
| 4940509 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.61 | 36.0 | 4.45e-01 | 72.0% | 94.0% |
| 3110622 | 2498.1.1.24 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M61 | 0.54 | 39.0 | 3.29e-01 | 73.9% | 45.1% |
D3
high
residues 233-290
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x2mA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 51.0 | 5.25e-01 | 72.4% | 79.6% |
| 3qw4B02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.71 | 62.0 | 4.33e-01 | 100.0% | 96.9% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 47.0 | 4.44e-01 | 77.6% | 59.2% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.67 | 53.0 | 4.78e-01 | 86.2% | 89.9% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 45.0 | 4.14e-01 | 72.4% | 57.7% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.62 | 53.0 | 4.24e-01 | 93.1% | 64.5% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 46.0 | 3.67e-01 | 81.0% | 39.0% |
| 2wglA00 | 1.10.4190.10 | Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF | 0.61 | 51.0 | 3.59e-01 | 100.0% | 83.3% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.61 | 42.0 | 3.79e-01 | 75.9% | 72.7% |
| 7t2rC01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.60 | 48.0 | 4.91e-01 | 100.0% | 100.0% |
| 1r4aE00 | 1.10.220.60 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GRIP domain | 0.60 | 44.0 | 4.63e-01 | 100.0% | 92.2% |
| 4bx8A04 | 1.25.40.850 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Sec1/Munc18 (SM) protein, domain 3b | 0.59 | 50.0 | 4.38e-01 | 98.3% | 64.1% |
| 2xvcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 44.0 | 4.50e-01 | 93.1% | 87.5% |
| 3ll9B00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.57 | 50.0 | 3.33e-01 | 100.0% | 43.8% |
| 3rk6A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 42.0 | 3.04e-01 | 94.8% | 62.2% |
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 42.0 | 4.03e-01 | 84.5% | 92.5% |
| 1o67C00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 44.0 | 3.13e-01 | 100.0% | 72.9% |
| 5yhhA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 41.0 | 3.00e-01 | 93.1% | 59.5% |
| 3ss3C02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 46.0 | 2.94e-01 | 100.0% | 59.7% |
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.51 | 36.0 | 3.35e-01 | 79.3% | 66.3% |
| 3amcA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 41.0 | 2.70e-01 | 96.6% | 37.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950654 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.93 | 86.0 | 5.79e-01 | 100.0% | 31.1% |
| 3953551 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.83 | 71.0 | 4.85e-01 | 100.0% | 27.5% |
| 3707222 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 53.0 | 5.48e-01 | 75.9% | 83.6% |
| 4995688 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 59.0 | 6.08e-01 | 87.9% | 94.5% |
| 3215991 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 51.0 | 4.93e-01 | 77.6% | 75.4% |
| 160865 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.67 | 46.0 | 4.18e-01 | 75.9% | 52.5% |
| 4247950 | 4994.1.1.1 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 | 0.66 | 52.0 | 4.43e-01 | 86.2% | 78.9% |
| 5070173 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.61 | 49.0 | 4.62e-01 | 100.0% | 71.2% |
| 3487676 | 548.1.1.0 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain | 0.58 | 44.0 | 4.43e-01 | 100.0% | 83.1% |
| 3277029 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.57 | 41.0 | 4.23e-01 | 93.1% | 85.5% |
| 3263925 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.56 | 48.0 | 3.10e-01 | 98.3% | 63.8% |
| 3346388 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.52 | 44.0 | 3.03e-01 | 94.8% | 94.0% |