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IMGVR_UViG_3300006225_000030-3300006225-Ga0082206_1019898

Arc-Vir

IMGVR_UViG_3300006225_000030-3300006225-Ga0082206_1019898

Identity

Kingdom:
archaea

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.70 48.0 3.35e-01 72.4% 49.2%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.68 57.0 5.08e-01 100.0% 65.1%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 55.0 4.29e-01 100.0% 44.2%
2ihr101 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.62 38.0 3.13e-01 100.0% 33.0%
2ap1A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 52.0 3.74e-01 94.8% 63.3%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 42.0 4.04e-01 72.4% 94.0%
3myuA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.61 53.0 3.90e-01 96.6% 67.1%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 3.57e-01 98.3% 63.8%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 42.0 4.14e-01 100.0% 75.8%
2o5iN05 1.10.40.90 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.56 38.0 3.96e-01 72.4% 90.4%
2kdoA02 1.10.10.900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › SBDS protein C-terminal domain, subdomain 1 0.55 41.0 3.85e-01 82.8% 83.6%
1j0tA00 1.10.2010.10 Mainly Alpha › Orthogonal Bundle › Crustacean CHH/MIH/GIH neurohormone › Crustacean CHH/MIH/GIH neurohormone 0.55 46.0 4.20e-01 100.0% 70.5%
1ztdA00 1.10.1520.20 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III 0.54 46.0 3.60e-01 94.8% 90.4%
3qatA01 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.53 42.0 2.89e-01 91.4% 76.3%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 40.0 3.96e-01 87.9% 89.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3408019 605.1.1.342 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Drc1-Sld2 0.71 46.0 4.63e-01 100.0% 65.0%
4531568 2004.1.1.430 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.68 43.0 2.69e-01 75.9% 13.8%
3619575 192.5.1.1 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.67 44.0 3.94e-01 100.0% 48.8%
4072921 192.5.1.20 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Val_tRNA-synt_C 0.65 44.0 4.15e-01 75.9% 59.4%
3708367 192.7.1.4 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.64 43.0 3.99e-01 74.1% 57.1%
4563674 192.7.1.4 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.63 43.0 4.03e-01 75.9% 58.6%
5079940 2003.1.1.27 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PDH_N 0.62 48.0 3.17e-01 100.0% 21.8%
4465167 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.59 54.0 4.31e-01 100.0% 55.5%
4053119 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.58 52.0 4.08e-01 100.0% 50.8%
2774099 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.58 46.0 3.17e-01 89.7% 50.7%
4076369 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.57 51.0 3.28e-01 100.0% 51.6%
None — 0.55 45.0 2.87e-01 96.6% 34.4%
3422052 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 40.0 3.62e-01 77.6% 61.3%
4383676 3922.1.1.67 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C 0.53 43.0 4.00e-01 100.0% 71.4%
4070346 192.8.1.343 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Val_tRNA-synt_C 0.53 42.0 4.10e-01 100.0% 76.9%
4387824 192.7.1.4 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.52 42.0 3.95e-01 100.0% 71.4%