←Back to structures
IMGVR_UViG_3300006225_000040-3300006225-Ga0082206_1020967
Arc-VirIMGVR_UViG_3300006225_000040-3300006225-Ga0082206_1020967
Identity
- Kingdom:
- archaea
Quality
71.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 113-171
Domain cluster:
representative
D2
medium
residues 172-247
Domain cluster:
rep: IMGVR_UViG_3300030493_000405-3300030493-Ga0310040_100017063__D55-117
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7kggC02 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.57 | 39.0 | 3.69e-01 | 71.1% | 97.8% |
| 3d00A01 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.54 | 40.0 | 3.21e-01 | 80.3% | 39.2% |
| 1oruA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 36.0 | 2.88e-01 | 72.4% | 58.6% |
| 3vn5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 37.0 | 2.88e-01 | 77.6% | 87.1% |
| 5jgjA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 2.87e-01 | 88.2% | 92.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602275 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.62 | 43.0 | 2.61e-01 | 72.4% | 15.7% |
| 4936238 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.57 | 42.0 | 3.40e-01 | 77.6% | 40.7% |
| 4069317 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 45.0 | 3.52e-01 | 90.8% | 69.5% |
| 3654794 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.54 | 37.0 | 2.27e-01 | 71.1% | 14.3% |
| 5054274 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 43.0 | 3.33e-01 | 90.8% | 61.6% |
| 4012248 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 39.0 | 3.01e-01 | 78.9% | 66.5% |
| 3698449 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.51 | 39.0 | 2.71e-01 | 85.5% | 88.2% |