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IMGVR_UViG_3300006225_000045-3300006225-Ga0082206_1021436

Arc-Vir

IMGVR_UViG_3300006225_000045-3300006225-Ga0082206_1021436

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-82_84-99
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09956.16 best Phage_cement_2 27.4 5.10e-06 98.9% 77.7%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.58 31.0 3.98e-01 88.5% 95.8%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.57 30.0 3.77e-01 87.4% 88.2%
2kcoA01 2.40.10.310 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 40.0 4.28e-01 98.9% 88.2%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.54 49.0 4.82e-01 100.0% 98.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064404 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 38.0 4.51e-01 83.9% 93.3%
2389402 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.56 30.0 3.64e-01 88.5% 83.3%
4151528 1077.1.1.1 few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.54 33.0 3.92e-01 83.9% 96.4%
4009008 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.51 32.0 3.84e-01 88.5% 100.0%