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IMGVR_UViG_3300006225_000060-3300006225-Ga0082206_10073810
Arc-VirIMGVR_UViG_3300006225_000060-3300006225-Ga0082206_10073810
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-94
Domain cluster:
rep: IMGVR_UViG_3300033153_015493-3300033153-Ga0366824_101405734__D185-314
D2
high
residues 125-224
Domain cluster:
rep: IMGVR_UViG_3300033990_000324-3300033990-Ga0373184_0002060_21170_24340__D289-396
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.71 | 36.0 | 3.70e-01 | 94.0% | 51.0% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.70 | 36.0 | 3.82e-01 | 95.0% | 54.9% |
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 34.0 | 3.26e-01 | 94.0% | 44.8% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 30.0 | 3.40e-01 | 95.0% | 59.7% |
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.59 | 21.0 | 3.42e-01 | 72.0% | 91.4% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 23.0 | 2.71e-01 | 85.0% | 47.9% |
| 6z9uA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 25.0 | 2.75e-01 | 83.0% | 49.4% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 32.0 | 3.93e-01 | 75.0% | 91.5% |
| 1aroP05 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 39.0 | 3.12e-01 | 96.0% | 35.9% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.55 | 28.0 | 3.61e-01 | 97.0% | 94.1% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.53 | 38.0 | 2.86e-01 | 100.0% | 28.6% |
| 3ne5B01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.52 | 27.0 | 2.86e-01 | 95.0% | 53.5% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.51 | 26.0 | 3.06e-01 | 96.0% | 69.7% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.78e-01 | 98.0% | 74.5% |
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.50 | 44.0 | 3.34e-01 | 98.0% | 90.6% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 42.0 | 3.27e-01 | 92.0% | 86.6% |
| 3ungC03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.50 | 31.0 | 2.85e-01 | 82.0% | 45.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058388 | 2007.15.1.19 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF7768 | 0.73 | 36.0 | 3.48e-01 | 87.0% | 41.8% |
| 5011455 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.71 | 35.0 | 3.88e-01 | 90.0% | 58.7% |
| 4170201 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.67 | 34.0 | 3.54e-01 | 94.0% | 51.6% |
| 5054762 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.66 | 34.0 | 3.39e-01 | 94.0% | 46.7% |
| 4994452 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.64 | 34.0 | 3.50e-01 | 94.0% | 52.6% |
| 5064069 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.59 | 30.0 | 3.29e-01 | 95.0% | 57.5% |
| 5061404 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 46.0 | 3.26e-01 | 85.0% | 76.7% |
| 1033457 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.58 | 32.0 | 3.95e-01 | 75.0% | 93.1% |
| 3605286 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.57 | 33.0 | 3.35e-01 | 98.0% | 56.0% |
| 5007352 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.56 | 28.0 | 3.05e-01 | 94.0% | 52.9% |
| 5035473 | 7592.1.1.8 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF_Card1 | 0.53 | 31.0 | 2.82e-01 | 95.0% | 41.4% |
| 141372 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.53 | 29.0 | 3.05e-01 | 92.0% | 57.1% |
| 3595739 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.52 | 40.0 | 3.11e-01 | 83.0% | 89.8% |
| 5002505 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 26.0 | 3.32e-01 | 83.0% | 81.7% |
| 4985494 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 38.0 | 2.51e-01 | 80.0% | 53.3% |
| 3931143 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.50 | 29.0 | 2.74e-01 | 73.0% | 43.2% |
| 4930787 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.50 | 33.0 | 3.22e-01 | 90.0% | 60.0% |
| 5026622 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.50 | 28.0 | 2.86e-01 | 88.0% | 54.7% |
D3
high
residues 533-641
Domain cluster:
rep: gwf2_scaffold_96_prodigal-single.1__X__X__00431__D3-86
D4
medium
residues 307-456
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
D5
medium
residues 457-532
Domain cluster:
rep: IMGVR_UViG_3300005835_000030-3300005835-Ga0078910_10246818__D77-146