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IMGVR_UViG_3300006225_000064-3300006225-Ga0082206_1020536
Arc-VirIMGVR_UViG_3300006225_000064-3300006225-Ga0082206_1020536
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 100-185_187-236_238-276
Domain cluster:
rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17289.9 best | Terminase_6C | 41.8 | 1.60e-10 | 80.0% | 93.5% |
D2
medium
residues 17-51
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 55.0 | 4.66e-01 | 97.1% | 77.9% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.68 | 57.0 | 3.63e-01 | 100.0% | 20.5% |
| 1d0nA02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 50.0 | 3.72e-01 | 100.0% | 32.7% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.64 | 51.0 | 4.49e-01 | 94.3% | 66.7% |
| 3dohA01 | 2.60.40.2180 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 51.0 | 3.57e-01 | 100.0% | 54.8% |
| 1iw4A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.64 | 47.0 | 4.44e-01 | 100.0% | 65.5% |
| 2htiA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 47.0 | 3.45e-01 | 100.0% | 40.5% |
| 4p4tA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 47.0 | 2.82e-01 | 97.1% | 14.3% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 48.0 | 3.70e-01 | 100.0% | 48.0% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 50.0 | 3.59e-01 | 100.0% | 41.9% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 46.0 | 3.32e-01 | 100.0% | 36.4% |
| 1xhsA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.61 | 46.0 | 3.44e-01 | 97.1% | 68.1% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.61 | 48.0 | 3.38e-01 | 100.0% | 58.7% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 47.0 | 3.13e-01 | 100.0% | 20.8% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.59 | 46.0 | 3.33e-01 | 100.0% | 44.7% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 43.0 | 3.22e-01 | 100.0% | 40.9% |
| 3t91B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.58 | 45.0 | 2.91e-01 | 100.0% | 23.7% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 45.0 | 3.01e-01 | 100.0% | 20.4% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.58 | 41.0 | 4.06e-01 | 100.0% | 92.0% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 44.0 | 2.93e-01 | 100.0% | 60.3% |
| 3v10A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 44.0 | 3.11e-01 | 100.0% | 36.3% |
| 6v55A01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.58 | 45.0 | 3.36e-01 | 100.0% | 34.8% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 45.0 | 3.62e-01 | 100.0% | 51.8% |
| 4mz2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 44.0 | 3.34e-01 | 100.0% | 59.5% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 44.0 | 3.55e-01 | 97.1% | 43.5% |
| 5cadA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 43.0 | 2.86e-01 | 100.0% | 57.5% |
| 1vajA02 | 3.30.1490.150 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 | 0.57 | 41.0 | 3.61e-01 | 97.1% | 75.7% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 42.0 | 3.57e-01 | 100.0% | 89.9% |
| 1te5A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 45.0 | 2.81e-01 | 100.0% | 37.5% |
| 3qt2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 44.0 | 3.28e-01 | 100.0% | 45.1% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.56 | 43.0 | 3.32e-01 | 100.0% | 56.0% |
| 1yq5A00 | 2.60.120.670 | Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. | 0.56 | 42.0 | 3.01e-01 | 100.0% | 36.1% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 42.0 | 2.95e-01 | 100.0% | 36.2% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.55 | 39.0 | 2.57e-01 | 80.0% | 33.5% |
| 2g9gA00 | 2.60.120.1020 | Mainly Beta › Sandwich › Jelly Rolls › PAW domain | 0.55 | 44.0 | 2.89e-01 | 100.0% | 21.2% |
| 2n59A00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 41.0 | 3.22e-01 | 100.0% | 48.5% |
| 6b9tF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 40.0 | 3.07e-01 | 97.1% | 32.1% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 41.0 | 3.08e-01 | 97.1% | 38.7% |
| 6ljcC01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 39.0 | 2.95e-01 | 100.0% | 29.9% |
| 2rbkA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.53 | 40.0 | 3.12e-01 | 100.0% | 76.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4991740 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.80 | 67.0 | 4.01e-01 | 100.0% | 13.5% |
| 5020380 | 210.1.3.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 | 0.79 | 67.0 | 4.16e-01 | 100.0% | 30.0% |
| 3297748 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.77 | 63.0 | 5.63e-01 | 100.0% | 74.5% |
| 4951704 | 210.1.3.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 | 0.74 | 61.0 | 3.76e-01 | 100.0% | 15.7% |
| 5038391 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.74 | 57.0 | 3.59e-01 | 100.0% | 15.7% |
| 3218303 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.70 | 57.0 | 5.40e-01 | 97.1% | 84.4% |
| 3404255 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.68 | 55.0 | 5.03e-01 | 97.1% | 86.0% |
| 4933800 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.66 | 50.0 | 4.03e-01 | 100.0% | 40.0% |
| 3781851 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.66 | 49.0 | 3.12e-01 | 100.0% | 14.7% |
| 4959407 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.66 | 51.0 | 4.79e-01 | 100.0% | 94.0% |
| 3670549 | 11.1.1.855 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 | 0.65 | 52.0 | 3.69e-01 | 100.0% | 44.0% |
| 4027080 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.65 | 52.0 | 3.62e-01 | 100.0% | 28.1% |
| 3970277 | 376.1.1.134 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › NosL | 0.65 | 49.0 | 4.15e-01 | 100.0% | 68.0% |
| None | — | 0.63 | 50.0 | 2.72e-01 | 100.0% | 9.5% | |
| 3673264 | 11.1.1.855 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 | 0.63 | 49.0 | 3.23e-01 | 100.0% | 30.6% |
| 4994521 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.62 | 50.0 | 3.56e-01 | 100.0% | 29.2% |
| 3675227 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.62 | 49.0 | 4.56e-01 | 100.0% | 76.0% |
| 4928815 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 4.17e-01 | 100.0% | 69.2% |
| 3682976 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.61 | 45.0 | 3.06e-01 | 100.0% | 20.0% |
| 4997461 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.60 | 48.0 | 3.75e-01 | 100.0% | 40.4% |
| 4538670 | 221.1.4.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like | 0.60 | 45.0 | 3.59e-01 | 94.3% | 43.3% |
| 4588060 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.60 | 46.0 | 2.96e-01 | 100.0% | 52.1% |
| 4401347 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.59 | 42.0 | 4.01e-01 | 97.1% | 85.5% |
| 4938247 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 45.0 | 3.47e-01 | 100.0% | 60.0% |
| 3369011 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.58 | 46.0 | 2.61e-01 | 100.0% | 9.7% |
| 3310614 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.58 | 49.0 | 2.85e-01 | 100.0% | 58.5% |
| 3744540 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 43.0 | 3.34e-01 | 94.3% | 88.4% |
| 4024700 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.54 | 41.0 | 2.43e-01 | 100.0% | 35.9% |
| 3222807 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 40.0 | 3.07e-01 | 100.0% | 72.2% |
| 3629655 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.54 | 39.0 | 2.84e-01 | 100.0% | 23.9% |
| 4943640 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 42.0 | 2.94e-01 | 100.0% | 61.7% |