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IMGVR_UViG_3300006257_000052-3300006257-Ga0099346_1017503

Arc-Vir

IMGVR_UViG_3300006257_000052-3300006257-Ga0099346_1017503

Quality

75.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 113-166
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jmuB02 1.10.2040.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 2 › Protein mu-1, chain B, domain 2 0.74 56.0 4.16e-01 79.6% 34.7%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 50.0 4.41e-01 74.1% 78.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3836801 5050.1.1.15 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like 0.71 59.0 3.66e-01 92.6% 58.7%
D2 high residues 168-229
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.81 39.0 4.56e-01 100.0% 64.4%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.72 62.0 4.44e-01 100.0% 95.9%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.69 59.0 4.24e-01 100.0% 95.5%
2yweA05 3.30.70.2570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation factor 4, C-terminal domain 0.69 60.0 5.84e-01 100.0% 89.7%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.68 58.0 4.29e-01 100.0% 82.3%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.68 47.0 3.55e-01 72.6% 32.7%
1zy9A03 2.60.40.2760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 35.0 4.12e-01 100.0% 72.1%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 59.0 4.97e-01 100.0% 71.7%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.66 55.0 3.92e-01 100.0% 87.3%
2a2lC00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.65 42.0 3.32e-01 100.0% 29.4%
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 57.0 4.69e-01 100.0% 72.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 54.0 4.07e-01 100.0% 95.2%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 45.0 2.92e-01 75.8% 85.1%
4kfuA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 50.0 3.52e-01 88.7% 52.2%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 43.0 3.67e-01 72.6% 84.8%
3mcsA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 47.0 3.36e-01 88.7% 43.1%
5u81A01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.61 51.0 3.49e-01 100.0% 91.5%
5ff5A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 45.0 3.05e-01 80.6% 38.2%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 42.0 3.45e-01 75.8% 81.8%
1a9xA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 53.0 3.61e-01 100.0% 41.0%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.59 42.0 3.50e-01 74.2% 51.9%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 44.0 3.05e-01 83.9% 63.8%
2rflH00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.59 45.0 3.40e-01 83.9% 42.9%
4bt2A02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 43.0 3.51e-01 80.6% 65.9%
5yhoA02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 42.0 3.47e-01 80.6% 65.9%
2r39A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 4.26e-01 100.0% 59.6%
3of1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 40.0 3.17e-01 93.5% 33.8%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 42.0 3.54e-01 79.0% 50.4%
1xv2D02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 43.0 3.50e-01 82.3% 65.0%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 52.0 4.25e-01 100.0% 71.4%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 51.0 4.08e-01 100.0% 65.8%
2q7dA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 50.0 3.51e-01 100.0% 50.0%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 44.0 3.44e-01 87.1% 60.9%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.18e-01 100.0% 65.9%
3h5nD02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 39.0 2.64e-01 75.8% 25.6%
3r5xD02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 49.0 3.64e-01 100.0% 56.1%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 39.0 3.25e-01 80.6% 53.2%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.54 37.0 2.27e-01 71.0% 13.4%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 45.0 4.01e-01 100.0% 64.9%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 46.0 3.94e-01 100.0% 62.6%
3razA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 40.0 3.23e-01 83.9% 45.2%
3dshA01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 46.0 3.26e-01 100.0% 40.1%
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 42.0 3.16e-01 87.1% 53.8%
2dfjA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 40.0 2.67e-01 83.9% 71.5%
2q22A00 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 36.0 2.94e-01 74.2% 39.2%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 46.0 3.52e-01 100.0% 66.7%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 44.0 3.39e-01 96.8% 85.9%
4f9zA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 36.0 3.15e-01 75.8% 70.9%
1jw9B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 39.0 2.62e-01 80.6% 26.2%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.53e-01 88.7% 70.5%
1v57A03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 3.21e-01 91.9% 50.7%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.51 43.0 2.75e-01 100.0% 94.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3423236 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 61.0 5.74e-01 95.2% 74.7%
4302934 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.74 64.0 4.58e-01 100.0% 94.9%
3972650 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 60.0 5.02e-01 95.2% 98.2%
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.71 62.0 6.35e-01 100.0% 100.0%
3741860 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.66 45.0 3.60e-01 72.6% 80.0%
3835922 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.66 45.0 3.67e-01 72.6% 43.3%
3940836 304.8.1.72 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP 0.65 56.0 4.78e-01 100.0% 99.0%
3509629 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.65 59.0 4.99e-01 100.0% 96.0%
5046979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 46.0 3.76e-01 72.6% 90.9%
5037079 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 5.53e-01 100.0% 100.0%
3223489 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.63 43.0 3.47e-01 72.6% 76.9%
5001318 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 43.0 3.59e-01 71.0% 86.4%
3500089 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 56.0 4.71e-01 100.0% 65.7%
4003701 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.63 54.0 4.70e-01 100.0% 95.0%
3646599 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.62 44.0 3.44e-01 74.2% 32.9%
5043632 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 51.0 3.67e-01 95.2% 46.9%
5074927 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.61 45.0 2.99e-01 80.6% 34.0%
5045010 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.61 45.0 3.06e-01 80.6% 37.5%
4987637 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.61 55.0 3.20e-01 100.0% 17.5%
4948243 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.61 45.0 3.06e-01 80.6% 37.5%
3175364 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.61 41.0 3.15e-01 72.6% 73.5%
1007317 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 48.0 3.38e-01 88.7% 52.5%
3593295 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 3.55e-01 74.2% 90.0%
3927766 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.60 42.0 3.24e-01 74.2% 66.2%
3313678 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.34e-01 74.2% 32.9%
4028834 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.60 41.0 3.37e-01 72.6% 85.0%
4947741 821.1.1.17 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 0.60 46.0 4.19e-01 85.5% 62.4%
3897014 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.59 40.0 3.63e-01 71.0% 72.9%
4236834 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.58 44.0 4.08e-01 85.5% 62.4%
4990966 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.58 44.0 2.98e-01 82.3% 36.7%
4935496 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.57 42.0 2.85e-01 79.0% 49.6%
5018703 815.1.1.0 a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.57 48.0 4.34e-01 98.4% 67.8%
3606548 2485.1.1.45 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.56 45.0 2.85e-01 91.9% 24.2%
3742407 11.1.8.6 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Ctag/Cox11 (Pfam 04442) › PF26282 0.56 50.0 4.00e-01 100.0% 58.3%
3196591 11.1.1.871 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26282 0.55 47.0 3.52e-01 100.0% 69.4%
4945021 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 3.78e-01 95.2% 77.3%
4064225 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 45.0 3.52e-01 100.0% 42.6%
4947557 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.54 40.0 2.78e-01 83.9% 55.9%
4665451 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.54 41.0 2.79e-01 83.9% 55.9%
5049691 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.49e-01 82.3% 69.0%
3522202 11.1.1.589 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig 0.53 47.0 3.30e-01 100.0% 31.0%
5049523 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.52 40.0 2.68e-01 85.5% 36.7%
3213166 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 42.0 2.78e-01 100.0% 60.9%
3222721 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.46e-01 100.0% 64.4%
3919775 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.83e-01 100.0% 62.0%
None 0.51 40.0 2.79e-01 87.1% 51.4%
5048521 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.60e-01 85.5% 88.2%
D3 medium residues 24-79
PDB