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IMGVR_UViG_3300006257_000114-3300006257-Ga0099346_1034837

Arc-Vir

IMGVR_UViG_3300006257_000114-3300006257-Ga0099346_1034837

Quality

93.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-148
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.78 60.0 6.15e-01 81.9% 100.0%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.73 61.0 5.33e-01 90.5% 85.7%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.71 45.0 5.51e-01 83.8% 100.0%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.71 56.0 5.87e-01 84.8% 92.8%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 52.0 5.60e-01 92.4% 98.8%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 53.0 5.47e-01 89.5% 89.7%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 43.0 4.75e-01 81.9% 80.0%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.68 41.0 5.01e-01 74.3% 100.0%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.68 51.0 4.87e-01 82.9% 68.6%
2or0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 48.0 3.96e-01 75.2% 69.9%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 43.0 3.64e-01 76.2% 38.6%
3p5pA03 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.65 58.0 4.13e-01 98.1% 61.0%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 39.0 3.76e-01 92.4% 53.3%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 47.0 5.12e-01 92.4% 98.8%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 50.0 4.83e-01 86.7% 88.3%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.62 48.0 4.64e-01 83.8% 98.3%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 47.0 4.82e-01 81.0% 95.1%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.61 44.0 4.19e-01 75.2% 72.0%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.61 46.0 4.15e-01 90.5% 58.2%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 47.0 4.37e-01 85.7% 96.4%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 45.0 4.20e-01 80.0% 75.6%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 41.0 4.41e-01 88.6% 82.2%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.59 45.0 4.82e-01 80.0% 96.6%
4iu9B02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.59 51.0 4.12e-01 94.3% 87.7%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 47.0 4.20e-01 86.7% 86.2%
2qksA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 44.0 4.48e-01 98.1% 79.2%
2c2nA01 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.59 46.0 3.53e-01 83.8% 53.8%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 40.0 4.50e-01 91.4% 93.7%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.58 39.0 4.07e-01 75.2% 73.0%
5xgbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 49.0 4.11e-01 94.3% 71.5%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.56 47.0 4.56e-01 93.3% 90.9%
4ocqA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.56 45.0 3.54e-01 90.5% 80.4%
1xd4A03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.54 44.0 3.46e-01 88.6% 60.1%
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 43.0 4.02e-01 88.6% 99.3%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.54 35.0 3.81e-01 89.5% 79.5%
3d85C00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 43.0 4.03e-01 89.5% 91.0%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 47.0 3.98e-01 99.0% 92.6%
3gyuA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 46.0 3.52e-01 95.2% 72.7%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 45.0 4.17e-01 94.3% 85.2%
1ldjA04 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.53 42.0 4.15e-01 87.6% 98.3%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 43.0 3.98e-01 92.4% 87.0%
3cskA02 3.30.540.30 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.52 43.0 3.72e-01 90.5% 66.0%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 45.0 3.55e-01 94.3% 93.9%
6b8hO01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.51 37.0 3.77e-01 81.0% 79.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991095 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.75 59.0 5.17e-01 82.9% 100.0%
4624818 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.72 56.0 5.96e-01 81.9% 95.6%
4999868 604.1.1.264 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Oxidored_q2 0.71 54.0 5.84e-01 80.0% 96.7%
3790618 621.1.1.1 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C 0.70 59.0 5.97e-01 91.4% 93.3%
3486453 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.69 62.0 6.26e-01 95.2% 100.0%
4573533 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.69 53.0 4.86e-01 93.3% 61.4%
4042803 101.1.17.32 alpha arrays › HTH › HTH › FF domain › LRR_LRWD1 0.69 49.0 5.34e-01 89.5% 90.6%
1711732 601.2.1.7 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › HBM 0.69 54.0 5.22e-01 83.8% 75.0%
3737535 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.68 50.0 4.03e-01 77.1% 97.1%
3232843 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.68 59.0 5.09e-01 96.2% 91.5%
4958049 4204.1.1.5 alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF2150 0.67 50.0 4.98e-01 79.0% 76.4%
3973500 601.1.2.144 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › HBM 0.66 56.0 5.46e-01 92.4% 94.8%
3583102 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 46.0 5.10e-01 73.3% 93.8%
3931056 633.16.1.0 alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.66 56.0 5.60e-01 90.5% 89.5%
5002309 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 48.0 4.07e-01 90.5% 46.9%
3823825 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.65 43.0 5.04e-01 81.9% 100.0%
3761039 603.1.1.97 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.64 51.0 3.89e-01 84.8% 69.8%
4970972 604.5.1.83 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › NfeD_membrane 0.64 46.0 5.13e-01 79.0% 100.0%
3214165 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 51.0 4.79e-01 86.7% 90.0%
3605845 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.64 54.0 4.62e-01 93.3% 98.2%
3309012 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.64 50.0 4.85e-01 82.9% 81.7%
4376272 601.2.1.4 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_C_2 0.63 46.0 4.19e-01 75.2% 77.0%
4331100 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 49.0 5.11e-01 81.0% 94.7%
3505950 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.62 43.0 4.52e-01 85.7% 82.2%
1413973 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.62 49.0 4.47e-01 83.8% 90.1%
3768254 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.62 49.0 5.17e-01 86.7% 98.9%
50204 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.62 47.0 4.33e-01 82.9% 96.5%
3828970 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.62 48.0 5.03e-01 82.9% 95.8%
3341807 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.61 48.0 4.73e-01 83.8% 83.6%
3857249 1134.1.1.10 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › NTP_transf_7 0.61 42.0 4.01e-01 76.2% 60.0%
3534852 109.4.1.1182 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NTP_transf_7 0.61 42.0 4.01e-01 76.2% 60.0%
3474661 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.61 48.0 4.69e-01 83.8% 91.3%
3567382 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 47.0 4.60e-01 83.8% 97.4%
4789617 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.60 44.0 4.58e-01 99.0% 85.1%
3526105 604.3.1.18 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27519 0.59 47.0 5.03e-01 84.8% 98.9%
3334463 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.58 53.0 4.89e-01 100.0% 86.7%
3847975 604.12.1.9 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.58 46.0 4.77e-01 87.6% 93.7%
5021445 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.58 50.0 4.89e-01 94.3% 92.2%
3700116 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 44.0 4.34e-01 87.6% 77.3%
4953661 606.1.1.1 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.57 46.0 4.62e-01 96.2% 83.6%
3456067 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.57 50.0 4.87e-01 100.0% 94.2%
4169813 185.1.1.5 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Gliadin 0.57 42.0 4.13e-01 88.6% 73.6%
4617196 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.56 41.0 4.40e-01 85.7% 90.0%
4982284 5060.1.1.0 alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C 0.56 46.0 3.71e-01 92.4% 63.2%
4958388 159.1.2.34 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › DUF2070 0.55 48.0 3.91e-01 98.1% 52.2%
3220314 5054.1.1.1 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.55 44.0 3.91e-01 100.0% 60.7%
3596478 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.54 46.0 3.82e-01 96.2% 76.1%
4374802 639.2.1.2 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › DUF2767 0.54 31.0 3.86e-01 87.6% 92.3%
3403421 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 3.99e-01 99.0% 70.3%
3562699 3736.1.1.0 alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 0.51 37.0 3.54e-01 78.1% 66.7%