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IMGVR_UViG_3300006338_000213-3300006338-Ga0068482_11616961

Arc-Vir

IMGVR_UViG_3300006338_000213-3300006338-Ga0068482_11616961

Quality

68.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-70
PDB
D2 medium residues 84-137
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.90 83.0 6.59e-01 100.0% 52.9%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.81 59.0 4.16e-01 83.3% 26.8%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.76 54.0 3.52e-01 74.1% 39.5%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.73 62.0 3.69e-01 96.3% 30.7%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 53.0 3.32e-01 77.8% 45.3%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.71 51.0 3.92e-01 75.9% 62.0%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 52.0 3.74e-01 83.3% 28.1%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.69 52.0 3.60e-01 81.5% 33.9%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.68 50.0 2.87e-01 83.3% 8.4%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.68 58.0 4.52e-01 96.3% 85.5%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 50.0 3.81e-01 81.5% 33.8%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.67 57.0 4.46e-01 96.3% 59.3%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 49.0 3.65e-01 81.5% 53.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.67 49.0 3.91e-01 79.6% 44.0%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 51.0 3.45e-01 85.2% 35.1%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 53.0 3.46e-01 88.9% 34.9%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.65 55.0 3.58e-01 96.3% 42.7%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 48.0 3.64e-01 81.5% 35.8%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 44.0 2.81e-01 70.4% 36.1%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.64 52.0 3.70e-01 92.6% 48.3%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.64 46.0 3.94e-01 77.8% 57.3%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.62 50.0 3.91e-01 92.6% 57.5%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.62 55.0 4.21e-01 100.0% 53.2%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 43.0 3.36e-01 77.8% 60.5%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 50.0 3.34e-01 98.1% 50.6%
3qr8A02 6.20.150.10 Special › Other non-globular › Chondroitinase Ac; Chain A, domain 3 › 0.60 46.0 4.10e-01 81.5% 64.4%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 48.0 4.15e-01 92.6% 88.6%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 44.0 3.41e-01 79.6% 60.8%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 42.0 3.28e-01 77.8% 58.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.58 42.0 3.79e-01 79.6% 53.8%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 2.80e-01 92.6% 15.0%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 46.0 3.87e-01 98.1% 65.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 46.0 3.51e-01 100.0% 65.6%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 3.17e-01 81.5% 36.3%
3jr1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 45.0 3.77e-01 92.6% 86.9%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 40.0 3.21e-01 79.6% 73.1%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.55 42.0 3.17e-01 85.2% 89.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 43.0 2.70e-01 88.9% 16.6%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 38.0 3.02e-01 81.5% 33.9%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 42.0 3.16e-01 88.9% 58.3%
2zxdA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 38.0 3.26e-01 81.5% 100.0%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 36.0 3.59e-01 87.0% 72.9%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 43.0 2.86e-01 100.0% 87.6%
1t4wA00 2.60.40.720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 2.84e-01 92.6% 53.1%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
441013 79.1.1.1 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_C 0.90 83.0 5.34e-01 100.0% 24.7%
4995814 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.89 67.0 4.62e-01 83.3% 26.9%
5003246 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.87 67.0 4.72e-01 81.5% 33.3%
3943688 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.81 62.0 4.22e-01 81.5% 31.1%
5014255 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.71 58.0 4.33e-01 90.7% 38.5%
3508722 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.71 49.0 3.74e-01 72.2% 79.2%
3520914 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.70 51.0 2.79e-01 77.8% 4.5%
3974178 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.70 61.0 4.43e-01 96.3% 69.7%
3250807 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.70 52.0 3.50e-01 81.5% 21.5%
4302456 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.70 54.0 4.60e-01 85.2% 67.8%
3630423 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 49.0 4.20e-01 74.1% 49.4%
4080135 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.69 59.0 4.48e-01 96.3% 77.7%
5061484 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.69 59.0 4.62e-01 96.3% 88.6%
3822070 331.10.2.8 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SAM_decarbox 0.68 59.0 4.61e-01 96.3% 92.2%
4797890 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.68 47.0 4.12e-01 83.3% 47.1%
2983288 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.02e-01 74.1% 44.9%
5051699 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.67 58.0 4.59e-01 96.3% 90.9%
3546306 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.67 52.0 4.36e-01 85.2% 67.4%
3353407 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.67 58.0 3.54e-01 96.3% 32.7%
3621363 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 52.0 3.32e-01 88.9% 17.2%
5054384 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.66 54.0 4.96e-01 90.7% 85.7%
4768813 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.65 55.0 3.70e-01 96.3% 49.8%
3804495 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.65 51.0 3.16e-01 90.7% 13.9%
3600206 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.65 53.0 3.68e-01 85.2% 57.7%
3242312 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 51.0 3.24e-01 88.9% 17.2%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.64 53.0 4.66e-01 92.6% 63.7%
134104 9.1.1.22 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3642 0.64 46.0 3.94e-01 77.8% 57.3%
4030568 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.63 53.0 3.29e-01 94.4% 28.1%
4279385 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 47.0 3.84e-01 81.5% 54.3%
5040009 5.1.3.22 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.63 47.0 2.89e-01 85.2% 12.8%
4179811 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.62 44.0 4.90e-01 74.1% 100.0%
3440815 5.1.11.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.61 49.0 3.05e-01 90.7% 17.1%
4013701 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 2.82e-01 88.9% 78.7%
3925491 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 40.0 2.68e-01 70.4% 17.7%
6628 241.1.1.3 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.60 44.0 3.41e-01 79.6% 60.8%
4016127 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.59 45.0 2.71e-01 85.2% 14.3%
4082107 7089.1.1.3 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD 0.59 42.0 3.89e-01 81.5% 58.6%
3724765 7515.1.1.5 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.59 50.0 2.89e-01 98.1% 39.5%
3986253 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.59 43.0 3.37e-01 79.6% 75.0%
5012885 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.59 46.0 3.06e-01 85.2% 32.7%
4666231 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.59 50.0 3.57e-01 98.1% 89.7%
4959147 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 2.91e-01 90.7% 13.7%
3464744 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.59 47.0 3.50e-01 92.6% 32.3%
3975309 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.59 43.0 3.50e-01 79.6% 70.9%
3402779 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 48.0 3.41e-01 94.4% 41.7%
3462291 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.58 44.0 2.80e-01 85.2% 15.8%
3718225 241.1.1.3 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.57 41.0 3.16e-01 77.8% 58.6%
4012524 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.57 42.0 2.63e-01 81.5% 13.4%
3431347 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 44.0 2.90e-01 87.0% 19.2%
4960615 5.1.3.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7133 0.57 44.0 2.81e-01 90.7% 33.7%
3391302 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 43.0 2.72e-01 83.3% 26.0%
3229613 12.1.1.31 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_59M 0.56 42.0 3.53e-01 85.2% 100.0%
3968482 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.55 42.0 2.69e-01 87.0% 28.2%
3521739 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 33.0 2.88e-01 100.0% 38.8%
3683602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 40.0 3.71e-01 90.7% 60.0%
3589527 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.54 38.0 2.46e-01 81.5% 23.8%
3445416 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 42.0 2.64e-01 90.7% 14.4%
5041229 375.13.1.0 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.53 38.0 3.75e-01 77.8% 95.0%
5079197 375.1.1.298 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.53 38.0 3.90e-01 75.9% 92.0%