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IMGVR_UViG_3300006360_000224-3300006360-Ga0079079_10149171

Arc-Vir

IMGVR_UViG_3300006360_000224-3300006360-Ga0079079_10149171

Identity

Kingdom:
archaea

Quality

87.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-25
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.83 62.0 3.66e-01 92.0% 11.8%
5jciA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.79 59.0 3.77e-01 92.0% 89.4%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.76 54.0 3.73e-01 92.0% 27.5%
4pe5B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.71 50.0 3.20e-01 100.0% 94.7%
3gf8A02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 44.0 3.08e-01 100.0% 67.5%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 51.0 3.04e-01 92.0% 14.9%
1f8wA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 45.0 2.92e-01 92.0% 14.0%
2xzm600 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.65 45.0 3.57e-01 96.0% 31.2%
1qxfA00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.65 41.0 3.68e-01 96.0% 41.4%
1o12B01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.64 45.0 3.65e-01 100.0% 43.1%
4fa8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.21e-01 100.0% 35.6%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 41.0 2.81e-01 100.0% 24.3%
3cgbA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 42.0 2.75e-01 92.0% 14.1%
6gnaA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 42.0 2.97e-01 92.0% 19.6%
6ovnB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 37.0 2.72e-01 100.0% 28.2%
4ht4A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.57 39.0 2.49e-01 92.0% 45.4%
6a95B00 2.30.130.120 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.57 39.0 3.44e-01 96.0% 66.1%
1cduA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 2.92e-01 100.0% 30.6%
17gsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 38.0 2.81e-01 92.0% 62.6%
5edxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 2.66e-01 100.0% 32.5%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 37.0 2.81e-01 92.0% 27.6%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.52 35.0 2.13e-01 100.0% 26.1%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 34.0 2.91e-01 92.0% 35.4%
1cczA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 2.73e-01 100.0% 26.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4282316 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.78 57.0 3.70e-01 92.0% 90.0%
3581626 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 56.0 3.70e-01 92.0% 19.2%
4129578 2003.1.2.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase 0.78 60.0 3.31e-01 92.0% 5.5%
3589756 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.78 57.0 3.56e-01 92.0% 15.2%
4878645 1043.1.1.0 ↗ beta complex topology › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein 0.78 56.0 5.62e-01 92.0% 82.8%
3952629 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.76 57.0 3.25e-01 96.0% 8.4%
5071572 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 54.0 4.32e-01 100.0% 83.1%
5027043 375.1.1.12 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.73 52.0 4.72e-01 96.0% 53.3%
5039420 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.73 55.0 3.82e-01 92.0% 87.8%
3224532 3534.1.1.3 ↗ beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 0.73 54.0 3.95e-01 92.0% 27.7%
5044354 375.1.1.12 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.72 52.0 4.00e-01 96.0% 33.3%
3278985 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.72 52.0 3.35e-01 92.0% 82.9%
1421567 375.1.1.12 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.70 48.0 4.15e-01 96.0% 44.6%
4000752 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.70 49.0 2.91e-01 92.0% 8.8%
4537134 2004.1.1.123 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD 0.63 48.0 2.94e-01 96.0% 11.4%
2812203 247.1.1.16 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 0.62 42.0 2.49e-01 92.0% 9.9%
4947837 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.61 45.0 2.65e-01 96.0% 47.8%
4395669 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.59 40.0 2.38e-01 100.0% 9.0%
3559319 101.1.11.134 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › Sarcoglycan_1 0.58 46.0 3.74e-01 100.0% 56.7%
4499276 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.58 46.0 3.45e-01 100.0% 42.5%
4151184 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.58 43.0 2.71e-01 100.0% 46.8%
5043828 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 37.0 2.07e-01 72.0% 4.2%
3932040 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.57 47.0 3.51e-01 100.0% 43.8%
4957048 2498.2.1.0 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.56 38.0 2.60e-01 88.0% 15.2%
4269863 859.1.1.4 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG13 0.56 37.0 2.39e-01 100.0% 85.8%
4181312 231.1.2.3 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ 0.55 41.0 2.40e-01 96.0% 39.2%
3827590 2007.5.1.20 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase,PMR5N 0.50 36.0 2.07e-01 100.0% 17.2%