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IMGVR_UViG_3300006388_000472-3300006388-Ga0079062_10227323

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300006388_000472-3300006388-Ga0079062_10227323 ↗
Kingdom:: archaea

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2q0iA00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.69	55.0	3.54e-01	90.2%	36.7%
7wq5A01	3.30.730.10	Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain	0.64	47.0	4.81e-01	83.6%	81.0%
1sq5C00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.63	53.0	3.40e-01	95.1%	64.8%
2yevB02	2.60.40.420	Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins	0.58	47.0	3.24e-01	91.8%	83.6%
3kl0D01	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.56	37.0	3.15e-01	100.0%	40.6%
1hqz800	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.54	43.0	3.37e-01	88.5%	78.8%
7qaqA01	3.40.50.11710	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase	0.54	42.0	2.94e-01	86.9%	85.9%
4rslA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.53	41.0	2.86e-01	86.9%	84.1%
2fd4A00	3.30.40.110	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain	0.53	46.0	3.90e-01	100.0%	60.0%
4lrvF00	1.10.1220.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE	0.52	44.0	3.77e-01	96.7%	73.8%
5hxgB00	1.10.4000.10	Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD	0.51	32.0	3.22e-01	80.3%	60.0%
3mkkA02	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.51	41.0	2.64e-01	98.4%	28.5%
3qp1A00	3.30.450.80	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain	0.51	40.0	2.94e-01	90.2%	91.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3727772	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.70	49.0	5.56e-01	98.4%	100.0%
3945393	7089.1.1.2 ↗	a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405	0.66	53.0	4.89e-01	90.2%	83.7%
4015118	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.64	57.0	5.48e-01	100.0%	95.7%
3172712	2004.1.1.159 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M	0.55	44.0	2.87e-01	86.9%	37.4%
3789792	164.1.1.0 ↗	alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II	0.54	41.0	3.65e-01	86.9%	72.6%
None	—		0.54	40.0	2.94e-01	83.6%	63.3%
4028879	5089.1.1.2 ↗	beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF	0.53	42.0	2.70e-01	93.4%	29.1%
3636629	2004.1.1.159 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M	0.52	40.0	2.67e-01	83.6%	78.0%
None	—		0.51	38.0	2.83e-01	83.6%	52.2%