←Back to structures
IMGVR_UViG_3300006388_000472-3300006388-Ga0079062_10227325
Arc-VirIMGVR_UViG_3300006388_000472-3300006388-Ga0079062_10227325
Identity
- Kingdom:
- archaea
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-119
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mloA03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 38.0 | 3.95e-01 | 86.6% | 52.5% |
| 2pmbA01 | 3.30.1850.10 | Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like | 0.64 | 50.0 | 4.35e-01 | 88.1% | 88.8% |
| 1chuA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.63 | 40.0 | 3.63e-01 | 74.6% | 48.9% |
| 1wwiA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.60 | 50.0 | 4.03e-01 | 98.5% | 92.5% |
| 1r4vA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.60 | 50.0 | 4.01e-01 | 100.0% | 79.5% |
| 1xkrA00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.59 | 50.0 | 3.64e-01 | 100.0% | 59.0% |
| 8h72B01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 47.0 | 3.15e-01 | 95.5% | 23.2% |
| 2lklA01 | 1.10.1900.40 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 | 0.58 | 44.0 | 4.37e-01 | 92.5% | 80.6% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 47.0 | 3.72e-01 | 92.5% | 76.2% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.57 | 43.0 | 3.52e-01 | 80.6% | 43.5% |
| 2r6oA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.56 | 46.0 | 3.08e-01 | 91.0% | 23.3% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.56 | 46.0 | 4.54e-01 | 92.5% | 100.0% |
| 1x4pA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.55 | 37.0 | 3.80e-01 | 77.6% | 72.7% |
| 1wljA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 43.0 | 3.24e-01 | 88.1% | 34.5% |
| 1lkvX02 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.55 | 48.0 | 3.88e-01 | 100.0% | 97.7% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.54 | 40.0 | 2.91e-01 | 79.1% | 38.7% |
| 2vs0A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.54 | 39.0 | 3.63e-01 | 74.6% | 61.0% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.54 | 39.0 | 3.59e-01 | 83.6% | 58.4% |
| 3qwlA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.53 | 44.0 | 3.63e-01 | 97.0% | 94.1% |
| 1bccH00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.53 | 43.0 | 4.39e-01 | 100.0% | 95.5% |
| 1beoA00 | 1.10.239.10 | Mainly Alpha › Orthogonal Bundle › Beta-cryptogein › Elicitin domain | 0.52 | 39.0 | 3.57e-01 | 85.1% | 67.3% |
| 3b77B02 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 41.0 | 3.80e-01 | 86.6% | 98.9% |
| 4bj1A01 | 1.20.120.1650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 39.0 | 3.34e-01 | 86.6% | 49.6% |
| 2ra1A01 | 1.20.58.790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.51e-01 | 83.6% | 62.2% |
| 2hcfA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 43.0 | 4.37e-01 | 95.5% | 100.0% |
| 4fe7A03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 36.0 | 3.14e-01 | 77.6% | 66.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3446022 | 3770.1.1.0 ↗ | alpha arrays › Flax-rust effector AvrM › Flax-rust effector AvrM › Flax-rust effector AvrM | 0.67 | 45.0 | 4.12e-01 | 100.0% | 54.1% |
| 4012164 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.60 | 37.0 | 3.76e-01 | 80.6% | 63.1% |
| 5069997 | 606.1.1.1 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.59 | 46.0 | 3.98e-01 | 85.1% | 81.9% |
| 3202292 | 101.38.1.3 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF6891 | 0.56 | 38.0 | 3.76e-01 | 79.1% | 67.1% |
| 4327633 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.55 | 38.0 | 3.18e-01 | 79.1% | 42.7% |
| 4164251 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 39.0 | 3.44e-01 | 77.6% | 48.6% |
| 4934293 | 4993.1.1.0 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit | 0.55 | 39.0 | 3.70e-01 | 74.6% | 62.5% |
| 4329062 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.55 | 33.0 | 3.46e-01 | 70.1% | 65.0% |
| 3375617 | 192.5.1.30 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF641 | 0.55 | 45.0 | 4.28e-01 | 89.6% | 100.0% |
| 5003109 | 1079.1.1.1 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD | 0.54 | 44.0 | 3.21e-01 | 97.0% | 71.1% |
| 4547686 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.54 | 42.0 | 4.15e-01 | 83.6% | 85.7% |
| 3287601 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.54 | 38.0 | 3.41e-01 | 77.6% | 53.2% |
| 3819565 | 574.1.1.1 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp | 0.53 | 36.0 | 3.65e-01 | 74.6% | 72.3% |
| 3172154 | 101.1.1.48 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SLIDE | 0.52 | 40.0 | 3.51e-01 | 88.1% | 96.4% |
| 3710472 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.51 | 44.0 | 3.03e-01 | 98.5% | 56.4% |