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IMGVR_UViG_3300006395_000257-3300006395-Ga0079066_102746914

Arc-Vir

IMGVR_UViG_3300006395_000257-3300006395-Ga0079066_102746914

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-71
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.70 61.0 4.80e-01 100.0% 66.7%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 57.0 3.93e-01 100.0% 30.6%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.63 48.0 4.32e-01 100.0% 57.6%
7oocE01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.63 54.0 4.79e-01 100.0% 68.2%
2ychA02 3.30.1490.300 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 52.0 5.19e-01 98.2% 98.3%
4hvzA02 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.62 50.0 4.22e-01 100.0% 69.6%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.61 51.0 4.17e-01 100.0% 59.7%
2jlmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 46.0 3.32e-01 100.0% 27.1%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 47.0 4.15e-01 100.0% 56.2%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 50.0 4.30e-01 100.0% 73.7%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 49.0 4.19e-01 100.0% 55.6%
2wmfA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.59 41.0 3.28e-01 100.0% 34.1%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.59 48.0 4.26e-01 100.0% 68.1%
3x1lB03 2.60.40.4350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 48.0 4.14e-01 100.0% 62.9%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 49.0 4.18e-01 100.0% 72.5%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 49.0 4.06e-01 100.0% 67.6%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 48.0 4.14e-01 100.0% 91.9%
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 48.0 3.49e-01 100.0% 43.7%
5h9fJ00 3.30.70.2660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 2.94e-01 82.5% 82.2%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 3.90e-01 100.0% 51.4%
1obbA00 3.90.1820.10 Alpha Beta › Alpha-Beta Complex › LDH C-terminal domain-like › AglA-like glucosidase 0.57 37.0 2.22e-01 84.2% 7.9%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 47.0 4.07e-01 100.0% 63.3%
1u8xX02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.56 37.0 2.48e-01 84.2% 14.8%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.10e-01 100.0% 62.8%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 47.0 4.17e-01 100.0% 64.8%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 44.0 3.47e-01 100.0% 39.4%
4necC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 3.17e-01 100.0% 35.6%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 45.0 3.85e-01 100.0% 68.6%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 40.0 3.32e-01 87.7% 41.2%
4ad8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 39.0 2.53e-01 93.0% 15.1%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.30e-01 100.0% 31.4%
1iq4A00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 43.0 3.20e-01 100.0% 31.3%
3v4vB01 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.53 45.0 3.58e-01 100.0% 48.4%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 43.0 3.79e-01 100.0% 73.2%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.51 42.0 3.90e-01 100.0% 74.1%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.53e-01 100.0% 66.1%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.54e-01 100.0% 65.8%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.46e-01 100.0% 62.7%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 41.0 3.43e-01 100.0% 63.8%
6vfrA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 40.0 3.42e-01 94.7% 81.9%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 42.0 3.46e-01 100.0% 66.1%
5eqjB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 41.0 2.85e-01 100.0% 33.8%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 36.0 2.28e-01 82.5% 16.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028387 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.67 58.0 4.92e-01 100.0% 58.9%
3167839 873.1.1.4 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP 0.66 55.0 3.88e-01 100.0% 40.4%
4622394 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.65 57.0 4.12e-01 100.0% 53.9%
4808078 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.65 55.0 5.13e-01 100.0% 84.0%
5057185 882.1.1.4 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.65 54.0 4.07e-01 100.0% 37.2%
3366877 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 55.0 3.49e-01 100.0% 35.6%
3522520 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.63 52.0 4.72e-01 100.0% 68.8%
4976820 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.63 53.0 3.75e-01 100.0% 43.5%
4943908 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.62 53.0 3.72e-01 100.0% 43.5%
3592296 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 43.0 3.42e-01 73.7% 40.8%
4201083 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.62 51.0 4.43e-01 100.0% 64.0%
3350776 304.5.1.23 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V_ATPase_I 0.62 51.0 4.65e-01 100.0% 68.8%
3184391 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.62 51.0 4.24e-01 100.0% 50.0%
5018724 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.62 52.0 4.52e-01 100.0% 96.8%
4187036 306.7.1.0 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain 0.62 50.0 4.24e-01 100.0% 88.2%
5035531 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.61 51.0 3.84e-01 100.0% 40.0%
5040508 2003.1.5.55 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.61 52.0 3.65e-01 98.2% 43.1%
4978232 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.61 52.0 3.65e-01 100.0% 30.0%
5020745 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.61 52.0 4.48e-01 100.0% 97.9%
3784198 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 50.0 4.27e-01 100.0% 71.4%
4199063 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.61 51.0 3.83e-01 100.0% 39.4%
3413150 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.60 49.0 4.21e-01 96.5% 76.0%
4937160 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.60 51.0 3.61e-01 100.0% 43.1%
3569962 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.60 49.0 4.31e-01 100.0% 57.9%
4965288 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.60 51.0 3.56e-01 100.0% 42.9%
3823137 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.60 48.0 3.81e-01 100.0% 39.3%
4451470 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.60 49.0 3.90e-01 100.0% 42.3%
4953217 2003.1.5.55 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.59 49.0 3.50e-01 100.0% 28.4%
3963977 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.59 50.0 4.49e-01 100.0% 65.9%
3702503 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.59 49.0 4.38e-01 100.0% 70.0%
3939548 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.59 48.0 4.21e-01 96.5% 76.8%
4981307 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.59 49.0 3.43e-01 100.0% 27.1%
3553551 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.59 47.0 4.14e-01 94.7% 75.8%
4988477 2003.1.5.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.59 51.0 3.28e-01 100.0% 32.1%
5004725 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.58 49.0 4.13e-01 100.0% 99.0%
4276635 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.58 48.0 4.17e-01 100.0% 77.0%
4086811 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.58 49.0 3.24e-01 100.0% 41.8%
3514215 279.1.1.2 a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Glyco_hydro_4C 0.58 39.0 2.54e-01 86.0% 14.3%
4992378 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.58 46.0 3.86e-01 100.0% 64.2%
3603492 2003.1.5.55 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.58 47.0 3.33e-01 100.0% 38.8%
4945568 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 47.0 3.61e-01 100.0% 39.3%
3959045 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.56 47.0 3.80e-01 100.0% 72.5%
3178013 304.9.1.103 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26763 0.56 46.0 3.95e-01 100.0% 56.0%
5023023 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.55 46.0 3.31e-01 100.0% 31.1%
3607243 2007.2.5.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.55 39.0 2.96e-01 75.4% 58.6%
3225904 7084.1.1.1 few secondary structure elements › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › PF28734 0.54 46.0 4.01e-01 100.0% 80.0%
4671096 304.4.1.54 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.54 46.0 3.63e-01 100.0% 49.2%
3741491 2003.1.5.63 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CARME 0.54 44.0 2.78e-01 100.0% 21.5%
3945028 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 45.0 3.70e-01 100.0% 66.1%
3544901 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.29e-01 100.0% 33.9%
3594850 325.1.8.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.53 45.0 3.98e-01 100.0% 66.7%
3638246 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 44.0 3.59e-01 100.0% 52.8%
3629452 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.53 43.0 3.02e-01 91.2% 49.7%
4031356 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 44.0 3.61e-01 100.0% 66.1%
3577533 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.52 43.0 3.51e-01 100.0% 46.7%
3386604 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 43.0 3.60e-01 100.0% 66.1%
4011172 331.3.1.46 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 0.52 42.0 3.11e-01 100.0% 76.2%
3699110 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.52 35.0 2.99e-01 71.9% 45.7%
3312048 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 43.0 3.57e-01 100.0% 66.1%
3189301 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.52 44.0 3.64e-01 100.0% 68.2%
4034375 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 43.0 3.55e-01 100.0% 66.1%
4032885 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 43.0 3.56e-01 100.0% 66.1%
5022734 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.51 40.0 2.74e-01 91.2% 77.6%
3591014 80.1.1.0 beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain 0.51 37.0 3.20e-01 82.5% 48.4%
3941747 101.1.9.78 alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.51 42.0 3.54e-01 100.0% 68.2%
5036240 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.51 40.0 2.83e-01 100.0% 65.1%