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IMGVR_UViG_3300006395_000257-3300006395-Ga0079066_10274693
Arc-VirIMGVR_UViG_3300006395_000257-3300006395-Ga0079066_10274693
Identity
- Kingdom:
- archaea
Quality
89.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-77
Domain cluster:
rep: IMGVR_UViG_3300009674_000599-3300009674-Ga0116173_100374219__D10-84
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m5kA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 51.0 | 4.04e-01 | 89.5% | 57.1% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.62 | 51.0 | 4.59e-01 | 90.8% | 66.0% |
| 6s6yD02 | 3.30.70.520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 46.0 | 3.69e-01 | 78.9% | 98.0% |
| 4k05A02 | 3.90.1150.140 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.61 | 47.0 | 3.78e-01 | 94.7% | 41.6% |
| 3cueB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.61 | 49.0 | 3.92e-01 | 92.1% | 46.1% |
| 3gb5A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.60 | 47.0 | 3.66e-01 | 89.5% | 50.8% |
| 1m5hA02 | 3.30.70.520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 44.0 | 3.58e-01 | 78.9% | 41.8% |
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.59 | 47.0 | 3.93e-01 | 90.8% | 77.8% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.59 | 49.0 | 4.47e-01 | 92.1% | 68.9% |
| 3psqB00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.58 | 48.0 | 3.78e-01 | 97.4% | 60.4% |
| 5k9aA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.57 | 49.0 | 3.62e-01 | 97.4% | 39.1% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.57 | 46.0 | 4.54e-01 | 89.5% | 91.3% |
| 4xmqA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 46.0 | 4.00e-01 | 94.7% | 91.0% |
| 2w1jA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.57 | 48.0 | 3.68e-01 | 98.7% | 42.1% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 39.0 | 3.58e-01 | 72.4% | 58.3% |
| 3jwhA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 47.0 | 3.60e-01 | 96.1% | 99.0% |
| 5yd0D01 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.56 | 49.0 | 3.93e-01 | 100.0% | 79.2% |
| 2lvlA01 | 2.170.150.60 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › | 0.56 | 47.0 | 4.11e-01 | 92.1% | 92.9% |
| 4btfA03 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 46.0 | 4.13e-01 | 96.1% | 78.6% |
| 2i7hA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.55 | 45.0 | 3.52e-01 | 94.7% | 55.6% |
| 2w1kA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.55 | 48.0 | 3.57e-01 | 100.0% | 39.4% |
| 2xbtA00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.55 | 46.0 | 3.63e-01 | 92.1% | 59.5% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 47.0 | 3.70e-01 | 98.7% | 95.3% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 41.0 | 3.14e-01 | 81.6% | 98.4% |
| 3qzqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 36.0 | 3.75e-01 | 89.5% | 75.4% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 45.0 | 4.50e-01 | 96.1% | 97.4% |
| 2kdkA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 39.0 | 3.53e-01 | 80.3% | 95.4% |
| 3pufL00 | 2.40.128.680 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 37.0 | 3.23e-01 | 75.0% | 64.7% |
| 2ychA02 | 3.30.1490.300 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 37.0 | 4.03e-01 | 80.3% | 100.0% |
| 4qnyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 43.0 | 3.76e-01 | 94.7% | 79.0% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.53e-01 | 81.6% | 80.4% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.52 | 43.0 | 3.54e-01 | 100.0% | 75.2% |
| 3aluA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.51 | 39.0 | 3.26e-01 | 88.2% | 91.1% |
| 1gz2A00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.51 | 40.0 | 3.34e-01 | 86.8% | 96.4% |
| 2kw8A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.51 | 43.0 | 3.49e-01 | 100.0% | 51.3% |
| 1ng5B00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.51 | 43.0 | 3.23e-01 | 98.7% | 52.4% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4276265 | 6012.1.1.0 ↗ | few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI | 0.69 | 36.0 | 4.95e-01 | 96.1% | 100.0% |
| 4464568 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.66 | 47.0 | 4.23e-01 | 85.5% | 55.0% |
| 2555628 | 304.21.1.1 ↗ | a+b two layers › Alpha-beta plaits › Formylmethanofuran:tetrahydromethanopterin formyltransferase › Formylmethanofuran:tetrahydromethanopterin formyltransferase › FTR | 0.62 | 46.0 | 3.69e-01 | 78.9% | 39.7% |
| 4169524 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.61 | 50.0 | 4.39e-01 | 89.5% | 63.5% |
| 5044583 | 304.21.1.1 ↗ | a+b two layers › Alpha-beta plaits › Formylmethanofuran:tetrahydromethanopterin formyltransferase › Formylmethanofuran:tetrahydromethanopterin formyltransferase › FTR | 0.61 | 44.0 | 3.74e-01 | 77.6% | 46.2% |
| 4948404 | 304.21.1.1 ↗ | a+b two layers › Alpha-beta plaits › Formylmethanofuran:tetrahydromethanopterin formyltransferase › Formylmethanofuran:tetrahydromethanopterin formyltransferase › FTR | 0.60 | 45.0 | 3.65e-01 | 78.9% | 41.4% |
| 4444949 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.60 | 49.0 | 3.98e-01 | 92.1% | 51.6% |
| 4427322 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.60 | 49.0 | 4.24e-01 | 89.5% | 56.7% |
| 4127225 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.59 | 49.0 | 4.30e-01 | 90.8% | 64.3% |
| 3808918 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.59 | 42.0 | 4.56e-01 | 80.3% | 95.0% |
| 5006953 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.59 | 43.0 | 4.01e-01 | 90.8% | 59.0% |
| 3269973 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.59 | 43.0 | 4.05e-01 | 77.6% | 68.4% |
| 4105404 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.59 | 49.0 | 4.31e-01 | 92.1% | 60.9% |
| 4567458 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.59 | 48.0 | 4.26e-01 | 92.1% | 65.2% |
| 4138489 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.58 | 49.0 | 4.35e-01 | 92.1% | 64.5% |
| 4397160 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.58 | 48.0 | 4.13e-01 | 92.1% | 59.2% |
| 3848575 | 328.8.1.3 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2, B3R | 0.58 | 51.0 | 3.40e-01 | 100.0% | 39.1% |
| 3726331 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 43.0 | 4.12e-01 | 88.2% | 67.8% |
| 3871837 | 328.8.1.1 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 | 0.58 | 51.0 | 3.90e-01 | 100.0% | 68.9% |
| 2476774 | 304.161.1.0 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in TMEM16 lipid scramblase › Alpha-beta plait domain in TMEM16 lipid scramblase | 0.58 | 44.0 | 3.49e-01 | 84.2% | 40.2% |
| 4030215 | 2003.1.5.97 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_32 | 0.57 | 46.0 | 3.38e-01 | 94.7% | 95.8% |
| 3192842 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.56 | 45.0 | 3.21e-01 | 89.5% | 75.1% |
| 3282901 | 223.1.1.35 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 | 0.56 | 48.0 | 3.17e-01 | 100.0% | 29.4% |
| 3728165 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 43.0 | 4.03e-01 | 86.8% | 69.0% |
| 3795203 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 47.0 | 3.28e-01 | 96.1% | 34.8% |
| 3536870 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 46.0 | 3.08e-01 | 94.7% | 25.2% |
| 3741064 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.56 | 47.0 | 3.26e-01 | 96.1% | 74.4% |
| 4463004 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.55 | 47.0 | 3.62e-01 | 97.4% | 56.5% |
| 3183014 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.55 | 47.0 | 3.36e-01 | 96.1% | 77.4% |
| 3194447 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 44.0 | 2.96e-01 | 96.1% | 27.0% |
| 4937451 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.53 | 42.0 | 4.34e-01 | 88.2% | 98.6% |
| 3586908 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 46.0 | 4.20e-01 | 100.0% | 90.5% |
| 3931469 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 43.0 | 2.98e-01 | 96.1% | 32.9% |
| 3836163 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.53 | 45.0 | 4.06e-01 | 97.4% | 69.5% |
| 4988657 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 41.0 | 3.63e-01 | 90.8% | 86.4% |
| 3783738 | 304.123.1.1 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like › CGI-121 | 0.52 | 40.0 | 3.04e-01 | 85.5% | 73.9% |
| 4876705 | 4315.1.1.1 ↗ | beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 | 0.52 | 37.0 | 3.25e-01 | 75.0% | 56.4% |
| 5010118 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.52 | 36.0 | 3.23e-01 | 75.0% | 96.7% |
| 5041222 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.52 | 42.0 | 3.61e-01 | 92.1% | 76.2% |
| 4978472 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 41.0 | 3.85e-01 | 86.8% | 71.6% |
| 3412676 | 312.1.1.19 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › PF26216 | 0.52 | 44.0 | 3.62e-01 | 98.7% | 59.3% |
| 2605331 | 4315.1.1.1 ↗ | beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 | 0.52 | 38.0 | 3.26e-01 | 78.9% | 53.2% |
| 3782802 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.51 | 39.0 | 3.06e-01 | 85.5% | 35.6% |
| 3600238 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 41.0 | 2.65e-01 | 89.5% | 33.7% |
| 4616084 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.51 | 43.0 | 3.90e-01 | 98.7% | 90.8% |
| 3932192 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.51 | 41.0 | 3.32e-01 | 89.5% | 96.0% |
| 3601392 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.50 | 40.0 | 3.20e-01 | 92.1% | 47.1% |