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IMGVR_UViG_3300006398_000194-3300006398-Ga0079067_10226656

Arc-Vir

IMGVR_UViG_3300006398_000194-3300006398-Ga0079067_10226656

Identity

Kingdom:
archaea

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jc6C00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 48.0 3.51e-01 100.0% 29.6%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 47.0 4.08e-01 100.0% 51.7%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 3.65e-01 98.2% 93.1%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 44.0 3.38e-01 94.7% 81.3%
1tzfA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 36.0 2.37e-01 98.2% 15.9%
1ti2B01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.41e-01 100.0% 94.0%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 40.0 3.40e-01 100.0% 47.6%
3r31A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 44.0 2.97e-01 100.0% 60.5%
4iv9A03 1.10.405.40 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › 0.52 41.0 3.11e-01 91.2% 94.6%
1q8iA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 40.0 2.97e-01 93.0% 67.0%
3sftA00 3.40.50.180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylesterase CheB, C-terminal domain 0.51 38.0 2.72e-01 82.5% 44.4%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.51 41.0 2.84e-01 100.0% 25.2%
3ksrA01 6.20.370.100 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.51 25.0 3.09e-01 91.2% 92.0%
1d5aA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 38.0 2.77e-01 91.2% 34.1%
3mb5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.63e-01 80.7% 79.8%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 40.0 2.54e-01 100.0% 83.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5066664 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 54.0 5.98e-01 96.5% 93.3%
4981952 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 56.0 5.94e-01 100.0% 88.0%
4927873 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 56.0 5.55e-01 100.0% 73.3%
4967982 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.76 55.0 6.13e-01 100.0% 100.0%
4083057 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 53.0 5.55e-01 100.0% 86.0%
5068408 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.73 52.0 5.71e-01 100.0% 95.6%
5001806 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.73 51.0 5.40e-01 98.2% 87.5%
5063665 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.73 51.0 5.56e-01 98.2% 93.3%
4932061 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.71 50.0 5.51e-01 98.2% 95.6%
4951587 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.71 50.0 5.29e-01 100.0% 86.0%
4460255 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.70 50.0 5.24e-01 100.0% 86.0%
4593896 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.70 48.0 5.18e-01 96.5% 91.1%
4939553 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.70 49.0 5.20e-01 100.0% 86.0%
5035097 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.70 49.0 5.25e-01 98.2% 93.3%
4613882 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.70 49.0 5.16e-01 100.0% 86.0%
3610322 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.69 48.0 4.78e-01 100.0% 70.0%
4934987 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.68 47.0 5.02e-01 98.2% 91.1%
4057802 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.68 47.0 5.08e-01 98.2% 93.3%
4419456 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.68 47.0 5.00e-01 100.0% 87.8%
4982370 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 42.0 4.69e-01 80.7% 90.0%
4004354 10.12.1.115 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.66 59.0 4.44e-01 100.0% 65.9%
5030713 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.65 31.0 2.98e-01 91.2% 38.5%
3923675 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 58.0 5.57e-01 100.0% 87.7%
4200990 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 45.0 4.76e-01 100.0% 86.0%
4007473 10.12.1.115 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.65 58.0 4.38e-01 100.0% 65.9%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.35e-01 100.0% 90.0%
5038458 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.62 46.0 4.81e-01 94.7% 92.0%
3505111 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.62 55.0 4.65e-01 100.0% 60.2%
3530247 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 53.0 5.15e-01 100.0% 87.7%
3573620 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.59 49.0 4.87e-01 94.7% 88.3%
3471203 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.58 40.0 2.52e-01 71.9% 82.7%
4945015 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.58 51.0 4.01e-01 100.0% 55.0%
4504110 2484.1.1.197 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 0.57 43.0 2.62e-01 84.2% 89.4%
4931277 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 41.0 3.03e-01 87.7% 29.0%
4976925 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.56 48.0 3.60e-01 100.0% 43.1%
3329843 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 38.0 2.54e-01 84.2% 16.5%
3984485 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 25.0 2.21e-01 86.0% 23.7%
4964679 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.53 42.0 3.40e-01 87.7% 46.7%
4983992 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 41.0 3.06e-01 87.7% 32.9%
5017082 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 40.0 2.57e-01 93.0% 57.2%
5046816 102.1.4.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › Nop C-terminal domain › Transposase_20 0.52 38.0 3.14e-01 84.2% 96.7%
5056578 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.51 38.0 2.53e-01 86.0% 72.9%
4961799 102.1.4.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › Nop C-terminal domain › Transposase_20 0.50 36.0 2.84e-01 77.2% 43.2%
4452101 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.50 38.0 2.73e-01 91.2% 34.1%
4953654 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.50 40.0 2.53e-01 91.2% 62.9%