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IMGVR_UViG_3300006398_000194-3300006398-Ga0079067_10226658
Arc-VirIMGVR_UViG_3300006398_000194-3300006398-Ga0079067_10226658
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-75
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.76 | 64.0 | 5.50e-01 | 100.0% | 58.9% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.64 | 57.0 | 5.37e-01 | 100.0% | 98.6% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.63 | 55.0 | 5.10e-01 | 100.0% | 88.3% |
| 1ynjD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 42.0 | 4.38e-01 | 100.0% | 94.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 68.0 | 6.26e-01 | 100.0% | 93.3% |
| 3948608 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.67 | 58.0 | 5.65e-01 | 95.0% | 93.8% |
| 4278595 | 1.1.9.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C | 0.61 | 38.0 | 4.00e-01 | 100.0% | 69.1% |
D2
high
residues 83-137
Domain cluster:
rep: NC_074638__YP_010772018.1__QIT35-gp28__00028__D11-63
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.82 | 74.0 | 6.12e-01 | 98.2% | 91.4% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.79 | 70.0 | 5.79e-01 | 98.2% | 87.4% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.69 | 60.0 | 5.50e-01 | 98.2% | 91.7% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.67 | 56.0 | 5.02e-01 | 92.7% | 85.7% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 43.0 | 3.72e-01 | 96.4% | 42.2% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.64 | 49.0 | 4.60e-01 | 90.9% | 93.2% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 4.16e-01 | 92.7% | 73.2% |
| 2wfgA00 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.57 | 40.0 | 2.72e-01 | 78.2% | 33.2% |
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 35.0 | 3.66e-01 | 80.0% | 70.8% |
| 6fnnB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 42.0 | 3.26e-01 | 90.9% | 92.4% |
| 3q8dA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.54 | 44.0 | 3.32e-01 | 96.4% | 40.3% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.54 | 40.0 | 2.89e-01 | 85.5% | 48.2% |
| 5t89Y06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.48e-01 | 83.6% | 72.8% |
| 2d37A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 43.0 | 3.29e-01 | 100.0% | 58.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.90 | 77.0 | 7.53e-01 | 98.2% | 84.7% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.85 | 74.0 | 7.21e-01 | 94.5% | 93.2% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.82 | 74.0 | 5.97e-01 | 98.2% | 85.0% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.80 | 66.0 | 6.21e-01 | 89.1% | 92.3% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.80 | 68.0 | 6.31e-01 | 94.5% | 88.6% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.78 | 65.0 | 6.52e-01 | 90.9% | 90.9% |
| 4988093 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.78 | 67.0 | 5.39e-01 | 94.5% | 64.4% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.77 | 65.0 | 6.33e-01 | 92.7% | 90.0% |
| 4963571 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 66.0 | 6.21e-01 | 98.2% | 81.5% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.75 | 65.0 | 5.25e-01 | 100.0% | 73.4% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.74 | 62.0 | 6.09e-01 | 92.7% | 91.7% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 60.0 | 6.06e-01 | 92.7% | 89.1% |
| 5075574 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 61.0 | 5.48e-01 | 96.4% | 91.3% |
| 4930420 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 63.0 | 5.81e-01 | 98.2% | 75.7% |
| 5030835 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 62.0 | 5.38e-01 | 96.4% | 87.1% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 62.0 | 5.76e-01 | 98.2% | 75.7% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.72 | 61.0 | 5.95e-01 | 94.5% | 86.7% |
| 5025023 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.72 | 61.0 | 5.52e-01 | 96.4% | 90.7% |
| 3283905 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.70 | 58.0 | 5.48e-01 | 96.4% | 95.7% |
| 4602455 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 57.0 | 5.21e-01 | 92.7% | 91.8% |
| 3970970 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 58.0 | 5.32e-01 | 96.4% | 90.7% |
| 4953517 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 58.0 | 5.34e-01 | 96.4% | 90.5% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 57.0 | 5.27e-01 | 94.5% | 90.4% |
| 1176867 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.67 | 58.0 | 4.96e-01 | 100.0% | 83.5% |
| 3706998 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 42.0 | 4.08e-01 | 89.1% | 61.7% |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.63 | 52.0 | 4.96e-01 | 100.0% | 95.7% |
| 3592540 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 41.0 | 4.06e-01 | 89.1% | 63.3% |
| 4070519 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.61 | 49.0 | 4.59e-01 | 96.4% | 94.7% |
| 4992744 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.60 | 49.0 | 4.37e-01 | 96.4% | 94.1% |
| 3478167 | 2492.1.1.19 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › STIL_N | 0.58 | 46.0 | 3.50e-01 | 90.9% | 91.0% |
| 3332789 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.58 | 49.0 | 3.86e-01 | 96.4% | 48.3% |
| 4959031 | 11.4.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) | 0.55 | 42.0 | 3.23e-01 | 81.8% | 50.4% |
| 3392605 | 2492.1.1.49 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26560 | 0.55 | 42.0 | 3.38e-01 | 90.9% | 82.3% |
| 4952634 | 4011.1.1.0 ↗ | beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins | 0.54 | 40.0 | 3.58e-01 | 85.5% | 70.6% |
| 4947842 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.52 | 40.0 | 2.96e-01 | 90.9% | 75.4% |
| 3393297 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.51 | 43.0 | 3.79e-01 | 94.5% | 80.0% |
| 4946362 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 39.0 | 2.82e-01 | 90.9% | 62.6% |