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IMGVR_UViG_3300006412_000131-3300006412-Ga0099955_102623010
Arc-VirIMGVR_UViG_3300006412_000131-3300006412-Ga0099955_102623010
Identity
- Kingdom:
- archaea
Quality
91.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-39_61-253
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02934.21 best | GatB_N | 154.3 | 5.20e-45 | 97.8% | 80.1% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.74 | 34.0 | 5.07e-01 | 89.9% | 100.0% |
| 4aq1A02 | 2.60.40.1080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.73 | 21.0 | 3.48e-01 | 96.5% | 65.9% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 31.0 | 4.83e-01 | 85.0% | 96.8% |
| 3pm9A03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 32.0 | 4.44e-01 | 92.5% | 86.0% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 30.0 | 4.55e-01 | 87.2% | 100.0% |
| 1g0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 25.0 | 3.58e-01 | 96.0% | 71.8% |
| 1l9nA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 25.0 | 3.59e-01 | 96.0% | 71.9% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.65 | 23.0 | 3.10e-01 | 96.5% | 58.1% |
| 4dohB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 24.0 | 3.44e-01 | 96.5% | 70.5% |
| 1cg2A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 32.0 | 4.62e-01 | 86.3% | 100.0% |
| 2oxgC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 22.0 | 3.27e-01 | 96.0% | 68.3% |
| 3ostA00 | 3.30.310.220 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain | 0.63 | 31.0 | 4.21e-01 | 81.5% | 89.1% |
| 6a2bB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 25.0 | 3.75e-01 | 98.2% | 85.1% |
| 1fnoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 31.0 | 4.47e-01 | 85.9% | 100.0% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 32.0 | 4.51e-01 | 86.8% | 100.0% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 33.0 | 4.51e-01 | 96.5% | 100.0% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 22.0 | 3.18e-01 | 96.0% | 67.6% |
| 2q3zA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 22.0 | 3.34e-01 | 96.0% | 75.0% |
| 6b6lA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 22.0 | 3.14e-01 | 96.0% | 65.1% |
| 4ei0A01 | 2.60.40.3550 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 | 0.61 | 29.0 | 3.59e-01 | 96.0% | 70.2% |
| 4jcwA02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.61 | 20.0 | 3.20e-01 | 99.1% | 73.3% |
| 2yrlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 23.0 | 3.68e-01 | 98.2% | 92.8% |
| 4ewtA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 32.0 | 4.32e-01 | 88.1% | 100.0% |
| 8bvoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 21.0 | 3.26e-01 | 96.5% | 81.4% |
| 2okmA00 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 30.0 | 3.74e-01 | 96.5% | 78.8% |
| 5e4eC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 24.0 | 3.50e-01 | 97.8% | 84.2% |
| 1m5sA01 | 3.30.70.520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 35.0 | 4.20e-01 | 94.7% | 90.7% |
| 4exkA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 25.0 | 3.46e-01 | 98.2% | 83.7% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.55 | 22.0 | 3.27e-01 | 93.8% | 84.0% |
| 2y23A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 23.0 | 3.32e-01 | 96.9% | 82.7% |
| 4m00A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 21.0 | 3.22e-01 | 100.0% | 86.0% |
| 1xvsA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.53 | 26.0 | 3.39e-01 | 100.0% | 82.1% |
| 2h6oA03 | 2.60.40.2820 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 25.0 | 3.45e-01 | 95.2% | 90.0% |
| 2l3bA00 | 2.60.40.2410 | Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF12988, DUF3872 | 0.52 | 24.0 | 3.10e-01 | 98.2% | 73.8% |
| 2vn4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 26.0 | 3.47e-01 | 94.7% | 91.2% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 20.0 | 3.20e-01 | 73.6% | 100.0% |
| 4kkpA01 | 2.60.40.3880 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 22.0 | 2.88e-01 | 96.0% | 70.8% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4332087 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.98 | 96.0 | 8.20e-01 | 100.0% | 75.8% |
| 4506366 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.97 | 96.0 | 8.21e-01 | 100.0% | 77.2% |
| 4943776 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.97 | 95.0 | 8.06e-01 | 100.0% | 76.7% |
| 4932328 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.96 | 94.0 | 8.19e-01 | 99.1% | 79.0% |
| 5083487 | 321.1.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase | 0.95 | 93.0 | 8.07e-01 | 100.0% | 75.9% |
| 5000647 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.95 | 91.0 | 8.18e-01 | 100.0% | 76.2% |
| 4029261 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.90 | 84.0 | 7.38e-01 | 100.0% | 69.7% |
| 3787167 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.89 | 85.0 | 7.67e-01 | 100.0% | 76.9% |
| 4097523 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.89 | 83.0 | 7.50e-01 | 97.8% | 75.2% |
| 4937449 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.88 | 84.0 | 7.60e-01 | 98.7% | 76.6% |
| 3191609 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.88 | 84.0 | 7.16e-01 | 97.8% | 74.8% |
| 4060492 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.88 | 85.0 | 7.53e-01 | 99.6% | 75.0% |
| 4099566 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.88 | 85.0 | 7.40e-01 | 100.0% | 77.5% |
| 4946989 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.87 | 85.0 | 7.58e-01 | 100.0% | 76.7% |
| 4104928 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.87 | 85.0 | 7.32e-01 | 100.0% | 75.4% |
| 4067329 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.87 | 85.0 | 7.48e-01 | 99.6% | 75.4% |
| 3401691 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.87 | 83.0 | 7.32e-01 | 97.4% | 74.1% |
| 3933937 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.87 | 83.0 | 7.22e-01 | 98.2% | 77.8% |
| 3254583 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.87 | 85.0 | 7.39e-01 | 100.0% | 78.1% |
| 4021766 | 321.1.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase | 0.87 | 84.0 | 7.40e-01 | 100.0% | 76.5% |
| 3512078 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.79 | 68.0 | 6.34e-01 | 99.1% | 73.7% |
| 5064060 | 896.1.1.4 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 | 0.70 | 17.0 | 3.29e-01 | 100.0% | 70.0% |
| 3927357 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.68 | 33.0 | 3.45e-01 | 91.2% | 49.5% |
| 3464996 | 11.1.5.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS | 0.66 | 26.0 | 3.40e-01 | 96.0% | 63.1% |
| 5037261 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.66 | 37.0 | 4.43e-01 | 81.9% | 80.0% |
| 4501077 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.65 | 34.0 | 4.24e-01 | 96.9% | 81.3% |
| 5304 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.64 | 33.0 | 4.67e-01 | 97.4% | 100.0% |
| 3720487 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.64 | 35.0 | 4.77e-01 | 89.4% | 100.0% |
| 5007161 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 22.0 | 3.21e-01 | 96.5% | 65.0% |
| 4028284 | 327.11.2.11 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 | 0.63 | 37.0 | 4.81e-01 | 94.3% | 100.0% |
| 3662563 | 11.1.1.887 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMM62 | 0.62 | 24.0 | 3.35e-01 | 96.5% | 69.6% |
| 3640791 | 11.1.1.63 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_alpha | 0.61 | 25.0 | 3.05e-01 | 96.0% | 54.8% |
| 4025754 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 26.0 | 3.59e-01 | 96.5% | 75.8% |
| 4945152 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 22.0 | 3.01e-01 | 96.5% | 62.5% |
| 3507189 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 22.0 | 3.32e-01 | 96.5% | 76.0% |
| 4979023 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 23.0 | 3.40e-01 | 100.0% | 83.2% |
| 4963509 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 20.0 | 2.98e-01 | 96.0% | 70.0% |
| 3291070 | 304.61.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like | 0.56 | 35.0 | 4.20e-01 | 98.7% | 92.6% |
| 4989054 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 22.0 | 3.34e-01 | 98.2% | 84.2% |
| 3593883 | 898.1.1.0 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 | 0.54 | 33.0 | 3.93e-01 | 96.0% | 90.0% |
| 5027702 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 22.0 | 3.18e-01 | 100.0% | 83.2% |
| 4938818 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 25.0 | 3.40e-01 | 100.0% | 84.3% |
| 3613275 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 25.0 | 3.16e-01 | 96.5% | 71.0% |
| 4943583 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 25.0 | 3.48e-01 | 96.5% | 92.2% |
D2
medium
residues 274-311
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qp1A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.50 | 41.0 | 2.75e-01 | 100.0% | 43.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4608913 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.90 | 70.0 | 4.75e-01 | 94.7% | 25.6% |
| 4200497 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.90 | 66.0 | 5.00e-01 | 78.9% | 35.3% |
| 4116291 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.82 | 63.0 | 4.33e-01 | 94.7% | 25.4% |
| 5054266 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.79 | 62.0 | 4.31e-01 | 94.7% | 27.2% |
| 3481240 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 38.0 | 2.80e-01 | 89.5% | 22.0% |
| 3520785 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.50 | 36.0 | 2.33e-01 | 100.0% | 12.7% |