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IMGVR_UViG_3300006473_000026-3300006473-Ga0100239_1155721

Arc-Vir

IMGVR_UViG_3300006473_000026-3300006473-Ga0100239_1155721

Quality

81.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3efaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.79 56.0 4.03e-01 74.5% 28.1%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.77 52.0 4.16e-01 70.9% 39.4%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.72 49.0 3.86e-01 70.9% 38.7%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 50.0 3.61e-01 80.0% 28.4%
1v72A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.67 46.0 3.84e-01 80.0% 39.6%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.66 57.0 3.64e-01 100.0% 47.2%
2rhqB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 48.0 3.29e-01 80.0% 49.0%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.63 44.0 4.10e-01 74.5% 64.8%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.62 42.0 3.26e-01 70.9% 47.7%
2lepA00 3.30.70.2350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 4.02e-01 72.7% 68.3%
1jg5A00 3.30.1410.10 Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP 0.60 41.0 3.62e-01 74.5% 48.2%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 40.0 3.79e-01 72.7% 72.5%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.58 40.0 3.01e-01 76.4% 32.1%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.87e-01 90.9% 71.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.37e-01 89.1% 51.6%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.83e-01 92.7% 83.8%
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.58 39.0 3.82e-01 72.7% 63.5%
2hvzA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 42.0 3.90e-01 80.0% 66.7%
2e44A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 41.0 3.77e-01 80.0% 65.3%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 46.0 3.40e-01 96.4% 48.4%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.36e-01 90.9% 53.9%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 38.0 3.17e-01 70.9% 99.0%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.56 39.0 3.67e-01 72.7% 77.6%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 38.0 3.47e-01 72.7% 65.4%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.39e-01 94.5% 49.3%
2cteA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 38.0 3.48e-01 74.5% 67.1%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.55e-01 89.1% 84.5%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 37.0 3.19e-01 72.7% 45.0%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.23e-01 89.1% 47.9%
3u2rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.24e-01 89.1% 45.2%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 38.0 3.56e-01 74.5% 60.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.04e-01 80.0% 46.0%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.31e-01 81.8% 57.1%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.40e-01 87.3% 69.6%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.54 45.0 4.15e-01 98.2% 90.8%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.29e-01 89.1% 56.1%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 37.0 2.78e-01 76.4% 31.4%
3k4uE01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 34.0 2.65e-01 70.9% 25.9%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.53 45.0 4.07e-01 98.2% 90.9%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.16e-01 81.8% 79.1%
2rhqB01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.53 35.0 3.39e-01 72.7% 72.5%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.33e-01 90.9% 70.2%
2ww8A04 3.30.70.1830 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.37e-01 98.2% 55.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.30e-01 98.2% 50.4%
3e3xA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 35.0 2.93e-01 72.7% 53.1%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.38e-01 90.9% 79.2%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.24e-01 90.9% 66.1%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.50 40.0 3.56e-01 94.5% 59.5%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.16e-01 85.5% 67.0%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.44e-01 90.9% 79.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018119 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.92 71.0 4.85e-01 81.8% 26.5%
5056583 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.86 60.0 4.45e-01 74.5% 32.0%
3952307 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.83 56.0 3.98e-01 70.9% 27.1%
4017169 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.81 56.0 3.76e-01 76.4% 21.1%
3958295 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.79 57.0 5.08e-01 76.4% 56.0%
4665747 213.1.1.100 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF2686 0.72 60.0 4.16e-01 94.5% 27.9%
3443416 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.72 51.0 4.10e-01 74.5% 39.4%
5068528 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 48.0 3.65e-01 72.7% 31.5%
4058861 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 45.0 4.29e-01 74.5% 63.1%
4087732 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.64 44.0 2.59e-01 74.5% 26.7%
5074547 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 44.0 3.94e-01 94.5% 51.2%
4351219 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.62 48.0 3.25e-01 85.5% 49.8%
3277707 2002.1.1.70 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glu_synthase 0.62 52.0 3.18e-01 100.0% 19.0%
5023825 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.62 43.0 4.16e-01 74.5% 68.3%
3543483 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 44.0 3.12e-01 78.2% 35.7%
3446714 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 41.0 4.01e-01 74.5% 63.1%
3813612 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.60 50.0 4.01e-01 94.5% 63.6%
5000540 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 41.0 2.61e-01 74.5% 14.2%
3943466 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 43.0 3.19e-01 81.8% 36.9%
2600 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 47.0 3.62e-01 98.2% 76.2%
3738367 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 40.0 3.82e-01 70.9% 61.5%
5048905 101.1.9.20 alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.58 41.0 3.67e-01 74.5% 66.3%
5051463 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.57 42.0 3.74e-01 80.0% 57.5%
3667879 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 44.0 3.63e-01 87.3% 68.6%
3587825 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 39.0 3.61e-01 74.5% 69.3%
5005196 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.90e-01 87.3% 82.5%
4973627 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 42.0 3.40e-01 87.3% 68.0%
3279342 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.56 40.0 3.01e-01 81.8% 35.8%
4961822 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.83e-01 92.7% 71.1%
5078611 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.56e-01 80.0% 67.1%
3286591 101.1.2.612 alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 0.55 44.0 3.40e-01 98.2% 77.2%
5067388 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.87e-01 90.9% 83.7%
3781824 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.55 41.0 3.27e-01 87.3% 77.7%
4980177 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.54 43.0 3.54e-01 98.2% 60.8%
4996617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.09e-01 81.8% 64.3%
1948716 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.53 41.0 3.17e-01 90.9% 50.0%
3666427 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 45.0 3.33e-01 100.0% 49.0%
3257383 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 38.0 3.31e-01 81.8% 73.7%
3739321 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.52 43.0 3.16e-01 100.0% 38.0%
5001284 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 40.0 3.01e-01 89.1% 77.5%
5049164 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 42.0 3.37e-01 100.0% 76.9%
4945099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.19e-01 90.9% 66.4%
4027800 304.57.1.0 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.51 35.0 3.03e-01 72.7% 65.3%
4934352 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 39.0 2.83e-01 87.3% 40.0%
4948272 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.51 38.0 3.51e-01 89.1% 83.1%
3272247 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 42.0 3.23e-01 100.0% 52.4%
3980670 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 39.0 2.31e-01 100.0% 30.7%
5048462 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.22e-01 98.2% 61.6%
4648749 101.1.2.274 alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.50 38.0 3.16e-01 92.7% 83.3%