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IMGVR_UViG_3300006594_000225-3300006594-Ga0079073_10103041
Arc-VirIMGVR_UViG_3300006594_000225-3300006594-Ga0079073_10103041
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-59
Domain cluster:
representative
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002389 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.85 | 75.0 | 4.68e-01 | 94.9% | 46.4% |
| 3855999 | 109.4.1.1558 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2428, TPR_Trm732, TPR_Trm732_C | 0.54 | 47.0 | 2.49e-01 | 98.3% | 22.4% |
| 3736866 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.53 | 36.0 | 2.98e-01 | 79.7% | 35.8% |
D2
medium
residues 60-186
Domain cluster:
rep: DQ340064.2__ABC61276.1__X__00022__D272-425
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04454.19 best | Linocin_M18 | 39.6 | 5.30e-10 | 82.7% | 34.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e0zC03 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.89 | 55.0 | 6.34e-01 | 98.4% | 83.3% |
| 7mh2A01 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.88 | 56.0 | 6.58e-01 | 98.4% | 88.2% |
| 3dktA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.88 | 55.0 | 6.33e-01 | 98.4% | 84.2% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.78 | 72.0 | 5.41e-01 | 100.0% | 50.3% |
| 3mydA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.65 | 37.0 | 3.60e-01 | 85.0% | 50.7% |
| 3mixA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.63 | 36.0 | 3.78e-01 | 85.0% | 60.8% |
| 1vw4400 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 35.0 | 3.44e-01 | 86.6% | 50.0% |
| 1hyuA04 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 35.0 | 3.91e-01 | 100.0% | 86.2% |
| 1lwdA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 35.0 | 2.49e-01 | 100.0% | 20.6% |
| 2znhA03 | 6.20.40.10 | Special › Other non-globular › Porin MspA ribbon fold › | 0.53 | 22.0 | 3.10e-01 | 76.4% | 91.5% |
| 3iraA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 34.0 | 3.07e-01 | 85.8% | 50.0% |
| 2ztbA03 | 2.60.40.3040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 20.0 | 3.19e-01 | 84.3% | 100.0% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.50 | 40.0 | 3.67e-01 | 84.3% | 71.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4873245 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.91 | 83.0 | 8.28e-01 | 98.4% | 93.8% |
| 5002389 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.90 | 85.0 | 6.38e-01 | 100.0% | 52.1% |
| 5083051 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.89 | 86.0 | 6.31e-01 | 100.0% | 44.8% |
| 4991535 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.89 | 80.0 | 6.22e-01 | 98.4% | 48.2% |
| 4955362 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.89 | 80.0 | 6.35e-01 | 98.4% | 50.9% |
| 2724409 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.87 | 77.0 | 5.91e-01 | 100.0% | 44.9% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.82 | 77.0 | 5.83e-01 | 100.0% | 56.7% |
| 3075730 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.79 | 74.0 | 5.37e-01 | 100.0% | 46.2% |
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.79 | 74.0 | 5.53e-01 | 100.0% | 47.5% |
| 4954548 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.75 | 70.0 | 5.34e-01 | 100.0% | 50.2% |
| 4197190 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.60 | 26.0 | 3.73e-01 | 92.1% | 86.7% |
| 3728521 | 298.3.1.3 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › MmgE_PrpD_C | 0.53 | 48.0 | 4.87e-01 | 99.2% | 98.4% |
| 4946616 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.51 | 29.0 | 3.35e-01 | 100.0% | 76.7% |
| 4948943 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.50 | 28.0 | 3.41e-01 | 99.2% | 87.2% |