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IMGVR_UViG_3300006654_000319-3300006654-Ga0101728_1036792
Arc-VirIMGVR_UViG_3300006654_000319-3300006654-Ga0101728_1036792
Identity
- Kingdom:
- archaea
Quality
75.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-91
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 53.0 | 4.42e-01 | 86.4% | 65.2% |
| 1sxjE02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 35.0 | 3.54e-01 | 80.3% | 59.4% |
| 6k9pB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.56 | 44.0 | 3.38e-01 | 84.8% | 87.5% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 46.0 | 3.96e-01 | 90.9% | 75.5% |
| 3i71B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.71e-01 | 83.3% | 75.9% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.54 | 40.0 | 3.09e-01 | 81.8% | 33.3% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 32.0 | 3.54e-01 | 80.3% | 82.0% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.04e-01 | 78.8% | 78.3% |
| 3d59A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 2.58e-01 | 92.4% | 35.2% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.50 | 39.0 | 3.74e-01 | 86.4% | 77.2% |
| 2hpiA03 | 1.10.10.1600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain | 0.50 | 40.0 | 3.90e-01 | 84.8% | 84.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3813353 | 207.8.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N | 0.97 | 88.0 | 5.26e-01 | 95.5% | 16.4% |
| 5058805 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.96 | 92.0 | 5.36e-01 | 100.0% | 16.2% |
| 3979669 | 207.8.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N | 0.96 | 85.0 | 4.93e-01 | 92.4% | 13.3% |
| 4963653 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.91 | 84.0 | 4.96e-01 | 100.0% | 15.3% |
| 4028692 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.87 | 80.0 | 4.72e-01 | 98.5% | 14.6% |
| 4963654 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.79 | 65.0 | 3.96e-01 | 89.4% | 17.0% |
| 4196233 | 207.8.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N | 0.78 | 65.0 | 3.93e-01 | 92.4% | 14.4% |
| 3479475 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.70 | 57.0 | 3.84e-01 | 87.9% | 61.8% |
| 3486058 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 55.0 | 3.65e-01 | 86.4% | 45.8% |
| 5026768 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 55.0 | 4.56e-01 | 86.4% | 66.4% |
| 1788857 | 2004.1.1.444 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_PrkA | 0.66 | 47.0 | 3.20e-01 | 75.8% | 65.2% |
| 5030306 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.63 | 49.0 | 4.27e-01 | 81.8% | 85.3% |
| 2722539 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.63 | 54.0 | 4.55e-01 | 92.4% | 90.6% |
| 3843065 | 130.1.1.13 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Fan1_SAP | 0.59 | 48.0 | 4.66e-01 | 90.9% | 100.0% |
| 3519655 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.59 | 50.0 | 3.74e-01 | 90.9% | 76.1% |
| 4970556 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.57 | 47.0 | 4.37e-01 | 89.4% | 72.5% |
| 3714654 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.57 | 47.0 | 4.43e-01 | 90.9% | 91.3% |
| 2765413 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.56 | 45.0 | 3.03e-01 | 90.9% | 95.6% |
| None | — | 0.55 | 46.0 | 2.65e-01 | 90.9% | 16.1% | |
| 5013516 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.42e-01 | 77.3% | 60.0% |
| 4032512 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.53 | 37.0 | 3.51e-01 | 74.2% | 70.0% |
| 4972388 | 101.1.2.949 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28863 | 0.52 | 42.0 | 3.24e-01 | 100.0% | 65.5% |
| 5083248 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.52 | 31.0 | 3.26e-01 | 78.8% | 63.3% |
| 5011763 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 31.0 | 3.28e-01 | 78.8% | 69.1% |
D2
medium
residues 92-158_161-163