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IMGVR_UViG_3300006654_000319-3300006654-Ga0101728_1036798

Arc-Vir

IMGVR_UViG_3300006654_000319-3300006654-Ga0101728_1036798

Quality

92.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-46
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.79 70.0 5.48e-01 100.0% 54.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.77 67.0 4.50e-01 100.0% 29.9%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.75 64.0 5.29e-01 100.0% 67.1%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.74 63.0 4.32e-01 100.0% 93.4%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 63.0 4.36e-01 100.0% 90.5%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.72 61.0 5.03e-01 100.0% 71.1%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.70 56.0 3.37e-01 100.0% 12.9%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.70 58.0 4.67e-01 100.0% 53.2%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 57.0 4.12e-01 100.0% 93.0%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 49.0 3.27e-01 77.3% 67.8%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 4.08e-01 100.0% 35.4%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.68 55.0 4.38e-01 100.0% 95.1%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.67 57.0 4.85e-01 100.0% 57.9%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.67 50.0 3.65e-01 86.4% 47.1%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 56.0 4.61e-01 97.7% 77.6%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.66 52.0 5.12e-01 100.0% 86.0%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 3.45e-01 70.5% 51.0%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.65 55.0 4.13e-01 97.7% 62.5%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 54.0 4.63e-01 100.0% 63.2%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.65 54.0 4.14e-01 100.0% 41.3%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 46.0 2.68e-01 77.3% 29.5%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.64 51.0 3.42e-01 88.6% 93.5%
1vw4F01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.63 45.0 3.63e-01 77.3% 89.2%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.62 47.0 3.26e-01 86.4% 94.5%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 53.0 3.21e-01 100.0% 27.2%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 51.0 3.96e-01 100.0% 40.9%
2hvzA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 47.0 4.26e-01 97.7% 100.0%
3doaA03 3.40.970.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like 0.61 40.0 4.04e-01 100.0% 67.4%
2p4zA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 51.0 3.15e-01 97.7% 35.6%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.60 45.0 3.14e-01 81.8% 39.9%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.59 51.0 3.46e-01 100.0% 65.1%
3su0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 48.0 3.71e-01 100.0% 40.2%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 48.0 2.95e-01 95.5% 26.8%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.58 47.0 4.19e-01 100.0% 62.7%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 48.0 2.91e-01 97.7% 36.2%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 49.0 3.19e-01 100.0% 85.2%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 43.0 3.70e-01 81.8% 70.4%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.48e-01 100.0% 41.5%
7agpA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.56 43.0 4.08e-01 97.7% 100.0%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.80e-01 100.0% 51.1%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.51e-01 100.0% 45.5%
4issA03 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.55 43.0 3.20e-01 97.7% 73.0%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.22e-01 100.0% 39.4%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.32e-01 100.0% 38.7%
1c4pC00 3.10.20.180 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 47.0 3.34e-01 100.0% 85.6%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.53 40.0 3.21e-01 81.8% 69.3%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.11e-01 100.0% 33.9%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.56e-01 100.0% 87.8%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.52 41.0 3.06e-01 100.0% 62.2%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.03e-01 100.0% 39.4%
4x83A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.25e-01 100.0% 44.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949196 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.84 76.0 6.82e-01 100.0% 90.0%
3672250 207.1.1.116 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.82 69.0 4.46e-01 100.0% 21.6%
4973338 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.80 58.0 3.46e-01 77.3% 18.6%
5041711 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.78 67.0 5.78e-01 100.0% 92.9%
5040784 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.74 65.0 6.30e-01 100.0% 94.0%
3590193 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 62.0 5.21e-01 100.0% 93.8%
4946939 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.72 56.0 3.69e-01 100.0% 20.0%
4030365 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.71 52.0 4.03e-01 100.0% 34.3%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.71 59.0 5.21e-01 100.0% 97.1%
3748074 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.71 60.0 4.14e-01 100.0% 82.5%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.70 58.0 5.13e-01 100.0% 98.6%
3290436 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.69 60.0 5.34e-01 100.0% 93.8%
3957797 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.69 59.0 5.24e-01 100.0% 95.4%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 58.0 4.96e-01 100.0% 64.0%
5010744 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 52.0 4.70e-01 88.6% 100.0%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.68 54.0 5.40e-01 100.0% 91.1%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.68 55.0 4.82e-01 100.0% 96.0%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 55.0 4.37e-01 100.0% 45.7%
4948608 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.67 54.0 4.96e-01 100.0% 96.9%
4975038 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.67 55.0 4.97e-01 100.0% 95.4%
4952738 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.66 50.0 3.89e-01 88.6% 100.0%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 52.0 4.69e-01 100.0% 68.6%
4988554 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 52.0 4.79e-01 100.0% 96.9%
3258706 812.1.1.0 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain 0.65 50.0 3.71e-01 100.0% 30.4%
3405569 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.65 50.0 3.85e-01 100.0% 34.5%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.65 56.0 5.10e-01 100.0% 75.0%
3306806 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 44.0 4.38e-01 70.5% 97.8%
5022263 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.65 53.0 4.13e-01 100.0% 48.2%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 55.0 5.32e-01 100.0% 86.0%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 53.0 4.98e-01 100.0% 81.4%
3400462 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.64 47.0 4.42e-01 100.0% 65.5%
3589438 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.63 51.0 4.81e-01 100.0% 96.7%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 53.0 5.05e-01 100.0% 83.6%
5066439 304.3.1.14 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C 0.63 50.0 4.62e-01 100.0% 93.8%
4947457 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.62 51.0 3.14e-01 97.7% 87.0%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 51.0 4.77e-01 100.0% 80.0%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 50.0 4.75e-01 100.0% 82.8%
3712786 3346.1.1.0 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 0.62 44.0 3.05e-01 81.8% 68.0%
5075402 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.62 49.0 3.09e-01 97.7% 30.5%
4999557 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.61 47.0 2.90e-01 88.6% 24.9%
3839370 4104.1.1.1 beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 0.61 52.0 4.46e-01 100.0% 64.0%
4957284 219.1.1.153 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.61 48.0 3.31e-01 90.9% 86.3%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 50.0 4.68e-01 100.0% 77.6%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.61 48.0 4.66e-01 100.0% 82.0%
3959440 4.1.1.180 beta barrels › SH3 › SH3 › SH3 › DUF3107 0.60 47.0 4.39e-01 100.0% 96.9%
3911249 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.60 51.0 4.10e-01 100.0% 65.3%
3731895 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 4.33e-01 100.0% 62.3%
3935630 3346.1.1.0 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 0.60 45.0 2.98e-01 88.6% 64.4%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.59 48.0 4.79e-01 100.0% 97.8%
3766042 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.59 48.0 3.73e-01 100.0% 67.3%
3181846 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 45.0 3.77e-01 100.0% 92.2%
4106367 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.56 44.0 4.24e-01 100.0% 79.2%
3782773 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.56 43.0 4.16e-01 100.0% 78.2%
3390562 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 44.0 4.00e-01 100.0% 65.7%
3850966 3346.1.1.1 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N 0.55 44.0 2.78e-01 90.9% 71.2%
3263855 300.1.1.2 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.54 43.0 3.10e-01 97.7% 97.4%
3816922 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 43.0 2.70e-01 100.0% 22.1%
4950851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.90e-01 95.5% 97.8%
3610148 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.52 40.0 2.87e-01 100.0% 60.0%
4583560 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 39.0 3.93e-01 97.7% 97.8%
3247445 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.50 38.0 2.72e-01 81.8% 33.1%
4943472 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.50 41.0 3.25e-01 97.7% 64.8%