←Back to structures
IMGVR_UViG_3300006674_000005-3300006674-Ga0101770_100021833
Arc-VirIMGVR_UViG_3300006674_000005-3300006674-Ga0101770_100021833
Identity
- Kingdom:
- archaea
Quality
69.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 155-365
Domain cluster:
rep: NC_074638__YP_010772040.1__QIT35-gp50__00050__D49-148_161-281
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 17.0 | 2.80e-01 | 77.7% | 64.6% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.56 | 39.0 | 4.20e-01 | 81.5% | 83.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 998899 | 58.2.1.1 ↗ | beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N | 0.91 | 51.0 | 6.90e-01 | 76.8% | 100.0% |
| 3959638 | 58.2.1.0 ↗ | beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain | 0.81 | 50.0 | 6.11e-01 | 78.2% | 91.0% |
| 1692496 | 58.2.1.1 ↗ | beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N | 0.78 | 51.0 | 5.73e-01 | 77.3% | 81.7% |
| 5042040 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.52 | 35.0 | 3.84e-01 | 80.1% | 81.8% |
D2
high
residues 393-500_525-551
Domain cluster:
rep: OL597546.1__UUB23297.1__X__00001__D24-147
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14550.12 best | Peptidase_S78_2 | 74.5 | 1.10e-20 | 77.0% | 79.7% |
D3
medium
residues 6-59
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 50.0 | 4.72e-01 | 100.0% | 82.1% |
| 2fdoA00 | 3.30.1970.10 | Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like | 0.56 | 38.0 | 3.17e-01 | 70.4% | 88.2% |
| 1tedA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 42.0 | 3.19e-01 | 87.0% | 82.6% |
| 4lubB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 34.0 | 2.74e-01 | 98.1% | 34.0% |
| 2obdA01 | 3.15.20.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 | 0.54 | 38.0 | 2.44e-01 | 75.9% | 38.2% |
| 3e1tA02 | 3.30.9.100 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.53 | 43.0 | 3.15e-01 | 96.3% | 45.8% |
| 3sftA00 | 3.40.50.180 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylesterase CheB, C-terminal domain | 0.53 | 43.0 | 3.00e-01 | 92.6% | 89.9% |
| 1qhdA02 | 1.10.1350.10 | Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain | 0.53 | 40.0 | 2.75e-01 | 87.0% | 39.6% |
| 4qpiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 36.0 | 2.46e-01 | 74.1% | 64.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4184676 | 101.1.1.32 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD | 0.57 | 45.0 | 3.42e-01 | 92.6% | 78.0% |
| 3393085 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 44.0 | 4.05e-01 | 90.7% | 80.0% |
| 3387027 | 101.1.1.33 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 41.0 | 3.33e-01 | 90.7% | 83.1% |
| 3667432 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 39.0 | 3.32e-01 | 79.6% | 94.7% |
| 4945015 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.53 | 38.0 | 3.05e-01 | 77.8% | 93.3% |
| 3937237 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.53 | 43.0 | 3.18e-01 | 96.3% | 93.3% |
| 3796765 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.22e-01 | 100.0% | 70.0% |
| 3721305 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.51 | 40.0 | 3.47e-01 | 98.1% | 52.4% |
D4
medium
residues 66-141
Domain cluster:
rep: IMGVR_UViG_3300025471_000009-3300025471-Ga0209508_100072430__D694-760