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IMGVR_UViG_3300006736_000038-3300006736-Ga0098033_100016939

Arc-Vir

IMGVR_UViG_3300006736_000038-3300006736-Ga0098033_100016939

Identity

Kingdom:
archaea

Quality

93.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-150
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01894.23 best YjbQ 86.3 2.40e-24 89.9% 99.2%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p6cA00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.92 79.0 8.26e-01 100.0% 96.4%
1vphB00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.91 79.0 8.24e-01 100.0% 96.4%
1vmfC00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.91 78.0 8.27e-01 100.0% 97.8%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.75 36.0 4.26e-01 100.0% 66.0%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 34.0 3.67e-01 100.0% 57.9%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 34.0 4.26e-01 100.0% 83.7%
1ao0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.63 33.0 2.61e-01 100.0% 24.3%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 34.0 3.54e-01 100.0% 58.0%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.60 29.0 3.63e-01 100.0% 74.7%
5lxvA01 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 38.0 3.68e-01 100.0% 56.5%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.57 38.0 4.17e-01 100.0% 85.5%
2qjvA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 33.0 3.69e-01 100.0% 75.2%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.55 32.0 4.03e-01 98.7% 98.8%
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.55 36.0 4.07e-01 99.3% 87.4%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 39.0 3.97e-01 100.0% 75.7%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.07e-01 100.0% 64.3%
2y26A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 3.63e-01 100.0% 46.2%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 37.0 3.81e-01 100.0% 76.9%
1nziA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.50 36.0 4.02e-01 100.0% 95.6%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.50 34.0 3.92e-01 100.0% 94.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948466 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.93 80.0 8.53e-01 100.0% 98.5%
4945534 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.93 79.0 8.38e-01 99.3% 97.0%
159042 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.93 76.0 8.23e-01 99.3% 97.7%
4966627 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.92 81.0 8.43e-01 100.0% 96.4%
5031034 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.92 82.0 8.45e-01 100.0% 96.4%
5073429 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.92 83.0 8.46e-01 100.0% 95.8%
5018266 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.92 81.0 8.35e-01 100.0% 95.7%
5031477 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.92 83.0 8.59e-01 100.0% 98.6%
4999 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.92 80.0 8.35e-01 100.0% 96.4%
3958055 846.1.1.0 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) 0.91 77.0 8.23e-01 100.0% 97.7%
5000 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.91 79.0 8.19e-01 100.0% 95.7%
4971046 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.91 81.0 8.36e-01 99.3% 97.1%
5067506 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.91 79.0 8.09e-01 100.0% 93.1%
4963723 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.91 80.0 8.33e-01 99.3% 97.1%
5052180 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.90 78.0 8.22e-01 99.3% 98.5%
3278673 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.89 78.0 8.19e-01 99.3% 98.5%
3969551 846.1.1.0 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) 0.87 75.0 7.86e-01 98.0% 97.8%
3730456 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.81 67.0 6.86e-01 85.2% 99.3%
3520325 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.81 78.0 7.61e-01 100.0% 94.9%
3999221 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 41.0 4.74e-01 100.0% 88.6%
5044786 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 34.0 3.83e-01 100.0% 67.8%
3241746 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 42.0 4.66e-01 100.0% 85.0%
3177901 11.2.1.78 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_DCK_4th 0.62 37.0 3.91e-01 94.6% 64.4%
3519989 11.1.1.314 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPPII_Ig-like-1 0.58 37.0 4.25e-01 98.7% 86.4%
5042684 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 40.0 4.43e-01 100.0% 88.3%
3256562 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 40.0 4.12e-01 100.0% 77.1%
5045455 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 39.0 4.12e-01 100.0% 79.7%
3229404 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 40.0 4.35e-01 100.0% 91.2%
3309020 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 39.0 4.26e-01 100.0% 89.6%
3225139 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.54 36.0 4.05e-01 100.0% 87.8%
5056388 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.53 38.0 4.02e-01 100.0% 82.7%
5056886 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.53 38.0 3.40e-01 100.0% 53.2%
4941816 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 37.0 3.87e-01 100.0% 79.1%
4951299 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 38.0 3.88e-01 100.0% 77.9%
4990656 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 37.0 3.87e-01 100.0% 79.7%
5043410 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 37.0 4.00e-01 100.0% 86.9%
4978367 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 39.0 3.99e-01 100.0% 82.5%
5018391 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 38.0 3.84e-01 100.0% 77.9%
5044333 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 40.0 4.30e-01 100.0% 97.6%
5052758 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.50 37.0 3.92e-01 100.0% 84.4%