←Back to structures
IMGVR_UViG_3300006736_001932-3300006736-Ga0098033_100056430
Arc-VirIMGVR_UViG_3300006736_001932-3300006736-Ga0098033_100056430
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-125
Domain cluster:
rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00333__D119-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20352.3 best | DUF6647 | 29.6 | 7.90e-07 | 100.0% | 43.7% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jiuA00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.76 | 54.0 | 5.83e-01 | 92.7% | 85.7% |
| 4jixB00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.71 | 52.0 | 5.62e-01 | 93.5% | 89.4% |
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.69 | 50.0 | 5.18e-01 | 75.6% | 91.5% |
| 1eb6A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.69 | 57.0 | 5.08e-01 | 90.2% | 92.7% |
| 1pwuA04 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.67 | 56.0 | 4.58e-01 | 88.6% | 84.2% |
| 3lmcA00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.63 | 48.0 | 4.18e-01 | 81.3% | 90.1% |
| 2gs8A01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 43.0 | 3.87e-01 | 100.0% | 57.4% |
| 3k5wA02 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 46.0 | 3.62e-01 | 90.2% | 80.8% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 24.0 | 3.21e-01 | 82.9% | 83.1% |
| 1c4xA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 45.0 | 3.49e-01 | 100.0% | 74.7% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983979 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.80 | 57.0 | 5.93e-01 | 88.6% | 78.3% |
| 3837543 | 2498.1.1.51 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DA1-like | 0.79 | 74.0 | 5.82e-01 | 100.0% | 74.2% |
| 5035612 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.79 | 74.0 | 5.58e-01 | 100.0% | 58.2% |
| 4962725 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.75 | 71.0 | 5.52e-01 | 100.0% | 88.6% |
| 4935591 | 2498.1.1.161 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › eCIS_core | 0.75 | 62.0 | 6.13e-01 | 87.0% | 96.9% |
| 4261757 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.74 | 69.0 | 5.38e-01 | 100.0% | 62.4% |
| 4959203 | 2498.1.1.160 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_MA_2 | 0.74 | 69.0 | 5.47e-01 | 100.0% | 63.4% |
| 3284465 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.73 | 67.0 | 5.35e-01 | 100.0% | 88.3% |
| 4458442 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.72 | 52.0 | 5.47e-01 | 87.0% | 83.6% |
| 3519421 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.71 | 66.0 | 5.87e-01 | 100.0% | 88.2% |
| 5074559 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.71 | 62.0 | 5.90e-01 | 92.7% | 83.6% |
| 4961836 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.70 | 59.0 | 5.67e-01 | 98.4% | 78.6% |
| 4947544 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.70 | 49.0 | 4.60e-01 | 93.5% | 60.0% |
| 4929397 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.70 | 60.0 | 5.96e-01 | 93.5% | 86.9% |
| 4523900 | 2498.1.1.60 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2268 | 0.68 | 62.0 | 5.38e-01 | 100.0% | 86.8% |
| 4025675 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.68 | 64.0 | 5.37e-01 | 100.0% | 89.2% |
| 4937545 | 2498.1.1.60 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2268 | 0.67 | 62.0 | 4.94e-01 | 100.0% | 72.1% |
| 4048203 | 2498.1.1.20 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M35 | 0.67 | 56.0 | 5.02e-01 | 90.2% | 92.0% |
| None | — | 0.67 | 49.0 | 5.02e-01 | 88.6% | 79.2% | |
| 4975131 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.66 | 55.0 | 4.91e-01 | 87.8% | 93.5% |
| 3877262 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.66 | 58.0 | 5.84e-01 | 100.0% | 92.0% |
| 3251829 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.65 | 59.0 | 5.31e-01 | 100.0% | 84.7% |
| 5057933 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.65 | 60.0 | 5.81e-01 | 100.0% | 91.1% |
| 4203279 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.65 | 59.0 | 4.70e-01 | 100.0% | 66.3% |
| 3405450 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.64 | 58.0 | 4.79e-01 | 100.0% | 68.2% |
| 4032316 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 38.0 | 3.86e-01 | 100.0% | 63.3% |
| 3275673 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.60 | 46.0 | 3.40e-01 | 80.5% | 86.8% |
| 3598940 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.57 | 47.0 | 3.44e-01 | 89.4% | 76.7% |
| 3648818 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.56 | 51.0 | 4.24e-01 | 99.2% | 64.8% |
| 4024755 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.56 | 46.0 | 3.41e-01 | 89.4% | 63.3% |