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IMGVR_UViG_3300006750_000299-3300006750-Ga0098058_10005413
Arc-VirIMGVR_UViG_3300006750_000299-3300006750-Ga0098058_10005413
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 75-250
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.64 | 35.0 | 4.32e-01 | 98.9% | 84.4% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.64 | 40.0 | 4.88e-01 | 100.0% | 97.4% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.64 | 35.0 | 4.32e-01 | 98.9% | 87.5% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 37.0 | 4.00e-01 | 89.8% | 72.8% |
| 3dclA01 | 2.102.30.10 | Mainly Beta › 3-layer Sandwich › tm1086 (SG structure) fold › tm1086 (SG structure) domain | 0.59 | 34.0 | 3.69e-01 | 100.0% | 66.0% |
| 3mcaA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 31.0 | 3.97e-01 | 83.0% | 88.2% |
| 2gysA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 30.0 | 3.79e-01 | 97.2% | 94.7% |
| 1vq8B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 37.0 | 4.12e-01 | 100.0% | 87.6% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.52 | 31.0 | 3.47e-01 | 100.0% | 72.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4260084 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.75 | 36.0 | 4.33e-01 | 80.7% | 67.5% |
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.70 | 37.0 | 4.15e-01 | 80.7% | 64.3% |
| 3968432 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 36.0 | 4.65e-01 | 85.8% | 87.6% |
| 4961202 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.67 | 32.0 | 4.37e-01 | 84.1% | 87.8% |
| 1914511 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.66 | 34.0 | 3.98e-01 | 80.7% | 68.5% |
| 4441129 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.65 | 38.0 | 4.48e-01 | 99.4% | 82.5% |
| 3566270 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.65 | 30.0 | 4.12e-01 | 83.0% | 85.6% |
| 5046884 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.64 | 29.0 | 4.08e-01 | 81.2% | 85.4% |
| 3219717 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.64 | 30.0 | 4.09e-01 | 81.2% | 85.6% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 43.0 | 5.04e-01 | 99.4% | 97.6% |
| 5055336 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.62 | 30.0 | 4.05e-01 | 82.4% | 87.8% |
| 3535347 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 38.0 | 4.60e-01 | 98.9% | 95.7% |
| 164720 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.59 | 37.0 | 4.00e-01 | 89.8% | 72.8% |
| 3957568 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 33.0 | 4.31e-01 | 79.5% | 98.0% |
| 3784272 | 1.1.7.102 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 | 0.59 | 38.0 | 4.58e-01 | 98.3% | 96.7% |
| 3962616 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.55 | 30.0 | 3.09e-01 | 88.6% | 53.5% |
| 4575757 | 12.1.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-L-AF_C | 0.55 | 27.0 | 3.25e-01 | 98.3% | 70.9% |
| 5031673 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 27.0 | 3.38e-01 | 75.0% | 80.0% |
| 3639368 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.50 | 25.0 | 3.08e-01 | 100.0% | 73.6% |
D2
medium
residues 30-67_260-344_461-515
Domain cluster:
rep: IMGVR_UViG_3300001446_000118-3300001446-JGI20130J15133_100131816__D5-70_91-146_246-277
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17236.9 best | SU10_MCP | 44.4 | 2.10e-11 | 82.0% | 47.4% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.77 | 62.0 | 6.79e-01 | 87.1% | 100.0% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.71 | 34.0 | 3.92e-01 | 78.1% | 60.3% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.61 | 33.0 | 4.44e-01 | 86.5% | 100.0% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.61 | 57.0 | 4.75e-01 | 100.0% | 95.9% |
| 3so5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 25.0 | 3.18e-01 | 77.5% | 61.9% |
| 1ivzA00 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.60 | 29.0 | 3.37e-01 | 81.5% | 61.4% |
| 6i9gA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.59 | 53.0 | 5.43e-01 | 94.4% | 98.2% |
| 3dktA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.59 | 52.0 | 5.41e-01 | 94.4% | 100.0% |
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.58 | 25.0 | 3.72e-01 | 91.6% | 100.0% |
| 3m86A00 | 2.60.40.2020 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 27.0 | 3.40e-01 | 79.8% | 72.1% |
| 2w59B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 25.0 | 3.08e-01 | 79.2% | 62.3% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.55 | 32.0 | 3.86e-01 | 89.3% | 84.9% |
| 2gysA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 23.0 | 3.02e-01 | 77.5% | 68.4% |
| 2zauA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.53 | 32.0 | 3.76e-01 | 79.8% | 83.3% |
| 4eeeA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 23.0 | 2.85e-01 | 79.2% | 61.7% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.51 | 32.0 | 3.88e-01 | 86.0% | 97.3% |
| 3ayhB01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.50 | 25.0 | 3.36e-01 | 89.3% | 98.7% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080806 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.85 | 76.0 | 6.30e-01 | 92.7% | 99.3% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.84 | 76.0 | 6.35e-01 | 92.1% | 99.3% |
| 2899245 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.82 | 75.0 | 5.81e-01 | 94.9% | 91.6% |
| 5041371 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.79 | 75.0 | 6.09e-01 | 99.4% | 99.0% |
| 3026399 | 3555.1.1.1 ↗ | a+b three layers › Major capsid protein GP7 › Major capsid protein GP7 › Major capsid protein GP7 › GP7 | 0.78 | 70.0 | 5.53e-01 | 94.4% | 62.3% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.78 | 71.0 | 5.65e-01 | 94.9% | 92.9% |
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.75 | 68.0 | 5.86e-01 | 94.9% | 92.5% |
| 2841509 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.75 | 68.0 | 5.60e-01 | 94.9% | 93.5% |
| 3088027 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.74 | 68.0 | 5.78e-01 | 94.9% | 91.4% |
| 3942344 | 2485.3.1.19 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 | 0.74 | 67.0 | 5.52e-01 | 94.9% | 91.1% |
| 2538948 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.74 | 67.0 | 5.53e-01 | 94.9% | 90.0% |
| 2989289 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.74 | 67.0 | 5.41e-01 | 95.5% | 91.3% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 66.0 | 5.48e-01 | 94.9% | 90.6% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 70.0 | 5.91e-01 | 100.0% | 91.6% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 66.0 | 5.37e-01 | 94.4% | 92.5% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 66.0 | 5.43e-01 | 95.5% | 91.8% |
| 4313471 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.73 | 66.0 | 5.44e-01 | 94.9% | 88.0% |
| 2989356 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 66.0 | 5.47e-01 | 94.9% | 93.2% |
| 2989506 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.72 | 65.0 | 5.42e-01 | 95.5% | 96.9% |
| 2995325 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.72 | 65.0 | 4.99e-01 | 94.9% | 90.5% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.72 | 65.0 | 5.46e-01 | 94.9% | 90.0% |
| 1877546 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.72 | 64.0 | 5.32e-01 | 94.9% | 92.7% |
| 3090875 | 2485.3.1.14 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like | 0.72 | 65.0 | 5.30e-01 | 94.9% | 94.8% |
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.71 | 64.0 | 5.36e-01 | 94.9% | 98.9% |
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.70 | 62.0 | 4.68e-01 | 93.8% | 85.1% |
| 4890673 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.70 | 63.0 | 4.94e-01 | 94.9% | 92.0% |
| 3583655 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.70 | 63.0 | 5.07e-01 | 94.9% | 92.2% |
| 2989340 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 63.0 | 5.12e-01 | 95.5% | 90.8% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.69 | 66.0 | 5.77e-01 | 100.0% | 95.3% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.69 | 62.0 | 5.22e-01 | 95.5% | 92.4% |
| 2842229 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.69 | 62.0 | 4.81e-01 | 94.9% | 92.3% |
| 5083051 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.69 | 65.0 | 5.43e-01 | 100.0% | 96.6% |
| 3952452 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.68 | 64.0 | 5.37e-01 | 100.0% | 93.2% |
| 3918163 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.68 | 33.0 | 3.72e-01 | 94.4% | 57.9% |
| 2995627 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.68 | 60.0 | 5.01e-01 | 93.8% | 91.3% |
| 3977985 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.67 | 63.0 | 4.94e-01 | 100.0% | 79.0% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.66 | 63.0 | 5.33e-01 | 100.0% | 98.5% |
| 3700802 | 304.20.1.0 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0.66 | 34.0 | 3.71e-01 | 81.5% | 58.6% |
| 4991535 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.65 | 62.0 | 5.50e-01 | 100.0% | 95.5% |
| 4955362 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.65 | 62.0 | 5.58e-01 | 100.0% | 99.6% |
| 5083079 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 61.0 | 4.91e-01 | 100.0% | 86.8% |
| 5082710 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.65 | 60.0 | 4.86e-01 | 100.0% | 95.7% |
| 3164700 | 2485.3.1.15 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT | 0.64 | 61.0 | 5.13e-01 | 100.0% | 69.3% |
| 4990899 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.64 | 29.0 | 3.53e-01 | 72.5% | 62.6% |
| 3289660 | 305.1.1.3 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › DUF3000 | 0.62 | 34.0 | 4.04e-01 | 79.2% | 77.5% |
| 3587769 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.62 | 57.0 | 4.82e-01 | 100.0% | 94.5% |
| 2724409 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.62 | 57.0 | 4.99e-01 | 100.0% | 99.6% |
| 5050287 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.57 | 24.0 | 3.30e-01 | 76.4% | 74.4% |
| 3523342 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.56 | 35.0 | 3.53e-01 | 93.8% | 60.6% |
| 3613135 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 25.0 | 3.27e-01 | 79.2% | 76.0% |
| 4078276 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 34.0 | 3.87e-01 | 79.8% | 87.7% |
D3
medium
residues 345-460
Domain cluster:
rep: IMGVR_UViG_3300035556_000082-3300035556-Ga0394028_14341_13892_14914__D189-285
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 23.0 | 2.92e-01 | 86.2% | 55.4% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 41.0 | 3.98e-01 | 72.4% | 96.3% |
| 3oa4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 41.0 | 3.98e-01 | 73.3% | 97.0% |
| 4huzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 42.0 | 3.83e-01 | 74.1% | 88.1% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 23.0 | 2.86e-01 | 70.7% | 54.1% |
| 2r5vA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 40.0 | 3.74e-01 | 72.4% | 82.0% |
| 2qh0A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 40.0 | 3.89e-01 | 71.6% | 97.7% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 23.0 | 3.20e-01 | 93.1% | 80.0% |
| 2ivwA01 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 25.0 | 3.01e-01 | 95.7% | 61.3% |
| 3eeiA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.55 | 49.0 | 3.95e-01 | 100.0% | 85.7% |
| 5b7gA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 48.0 | 3.81e-01 | 100.0% | 85.1% |
| 3nm6B00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 48.0 | 3.92e-01 | 100.0% | 85.6% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 33.0 | 3.66e-01 | 71.6% | 79.3% |
| 1k4nA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 45.0 | 3.88e-01 | 92.2% | 87.4% |
| 4g41A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.52 | 46.0 | 3.72e-01 | 100.0% | 84.3% |
| 3kvqA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 30.0 | 3.51e-01 | 100.0% | 80.5% |
| 2p62A01 | 3.40.50.10620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains | 0.50 | 36.0 | 3.42e-01 | 100.0% | 60.1% |
| 2mjlA00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.50 | 36.0 | 3.06e-01 | 75.0% | 66.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.79 | 69.0 | 5.12e-01 | 100.0% | 39.2% |
| 4305615 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.58 | 40.0 | 2.79e-01 | 70.7% | 48.0% |
| 4232129 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.58 | 40.0 | 3.95e-01 | 71.6% | 96.8% |
| 2462225 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.54 | 48.0 | 3.91e-01 | 100.0% | 84.5% |
| 4293280 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.54 | 48.0 | 3.88e-01 | 100.0% | 86.5% |
| 3181857 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.54 | 47.0 | 3.96e-01 | 98.3% | 73.2% |
| 4482227 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.53 | 47.0 | 3.55e-01 | 100.0% | 82.0% |
| 3597406 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.52 | 46.0 | 3.37e-01 | 99.1% | 94.2% |
| 2132278 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.52 | 45.0 | 3.73e-01 | 100.0% | 56.4% |
| 4985165 | 2003.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Gp_dh_N | 0.51 | 45.0 | 3.94e-01 | 98.3% | 69.4% |
| 4992039 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.50 | 30.0 | 3.56e-01 | 76.7% | 90.5% |