Back to structures

IMGVR_UViG_3300006810_000795-3300006810-Ga0070754_100017759

Arc-Vir

IMGVR_UViG_3300006810_000795-3300006810-Ga0070754_100017759

Quality

67.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-84
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v8cA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.80 74.0 7.42e-01 100.0% 100.0%
3rpfC00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.80 64.0 6.82e-01 100.0% 98.6%
4wwmA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.78 70.0 7.18e-01 96.4% 100.0%
2q5wD00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.77 67.0 6.91e-01 100.0% 100.0%
5mpoB00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.77 67.0 6.74e-01 96.4% 94.0%
1vjkA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.76 71.0 6.99e-01 100.0% 96.6%
2kl0A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.76 55.0 5.85e-01 100.0% 86.3%
1fm0D00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.76 67.0 6.85e-01 100.0% 98.8%
1tygB00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.75 54.0 6.06e-01 96.4% 95.4%
1zud400 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.75 56.0 6.14e-01 100.0% 97.0%
3cwiA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.75 57.0 6.27e-01 100.0% 98.5%
4kkiA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.73 66.0 6.10e-01 100.0% 95.2%
2pmvA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.72 64.0 5.91e-01 100.0% 96.3%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.69 61.0 5.85e-01 98.8% 95.9%
2innE01 3.10.20.560 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenol hydroxylase 0.66 57.0 5.30e-01 96.4% 81.7%
2c7hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 55.0 5.44e-01 98.8% 90.7%
2gbmA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 55.0 5.56e-01 96.4% 97.5%
2mrpA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 55.0 5.60e-01 100.0% 98.7%
3rt3B01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 50.0 5.24e-01 96.4% 97.3%
1euvB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 49.0 5.07e-01 100.0% 92.4%
2al3A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 48.0 4.94e-01 97.6% 94.7%
3jyuA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 54.0 5.33e-01 100.0% 94.4%
2zeqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 49.0 5.05e-01 100.0% 94.9%
2incC00 3.10.20.270 Alpha Beta › Roll › Ubiquitin-like (UB roll) › TmoB-like 0.60 52.0 5.23e-01 97.6% 96.4%
6kykA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 49.0 4.90e-01 95.2% 100.0%
6bbtA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.58 51.0 4.57e-01 98.8% 98.3%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 4.76e-01 95.2% 97.5%
5ejrA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 4.74e-01 94.0% 98.8%
5k6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.56e-01 92.8% 81.9%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 48.0 4.62e-01 97.6% 95.8%
5fr6A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 46.0 4.61e-01 98.8% 92.8%
1g1cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.44e-01 92.8% 82.7%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.96e-01 83.1% 75.2%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 47.0 4.65e-01 95.2% 98.9%
1xf1A03 2.60.40.1710 Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily 0.55 45.0 3.90e-01 91.6% 86.3%
7sjlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 4.21e-01 90.4% 88.0%
1kkhA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 38.0 3.03e-01 78.3% 46.4%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.68e-01 98.8% 87.0%
1j5pA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 36.0 3.37e-01 72.3% 88.3%
4r9iA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.52 40.0 2.86e-01 85.5% 96.8%
1kcvL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.05e-01 92.8% 88.3%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.51 44.0 3.78e-01 98.8% 65.5%
2idbA02 3.40.1670.10 Alpha Beta › 3-Layer(aba) Sandwich › UbiD C-terminal domain-like › UbiD C-terminal domain-like 0.50 38.0 3.45e-01 81.9% 90.7%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 39.0 2.65e-01 88.0% 77.3%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972725 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.91 82.0 8.19e-01 95.2% 95.3%
3945554 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.88 83.0 7.88e-01 100.0% 95.8%
3979489 221.1.1.79 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Lambda_tail_I 0.85 78.0 7.75e-01 97.6% 95.3%
5072079 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.85 75.0 7.35e-01 95.2% 97.8%
3517370 221.1.1.79 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Lambda_tail_I 0.83 75.0 7.47e-01 97.6% 95.3%
5072255 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.83 75.0 7.45e-01 97.6% 94.1%
4950553 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.82 77.0 7.52e-01 100.0% 97.8%
4549715 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.82 74.0 7.41e-01 96.4% 97.6%
5066798 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.82 75.0 7.31e-01 97.6% 96.7%
6204 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.82 74.0 7.34e-01 97.6% 97.7%
5001444 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.81 74.0 7.33e-01 96.4% 98.8%
3963658 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.81 55.0 6.38e-01 95.2% 96.7%
5071001 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.80 74.0 7.40e-01 100.0% 100.0%
3278236 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.80 67.0 7.06e-01 94.0% 98.7%
4993387 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.79 69.0 6.75e-01 94.0% 97.8%
5071012 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.79 72.0 7.20e-01 100.0% 100.0%
4998176 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.79 69.0 6.69e-01 94.0% 95.6%
3265525 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.78 67.0 6.80e-01 92.8% 95.0%
1687340 221.1.1.35 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Urm1 0.78 70.0 7.18e-01 96.4% 100.0%
5076767 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.77 68.0 6.60e-01 95.2% 97.8%
1936522 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.77 67.0 6.80e-01 96.4% 96.3%
4982191 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.77 68.0 6.25e-01 96.4% 94.3%
4041337 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.76 70.0 6.86e-01 100.0% 96.7%
6202 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.76 67.0 6.85e-01 100.0% 98.8%
6206 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.75 54.0 6.06e-01 96.4% 95.4%
4578509 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.74 65.0 6.51e-01 96.4% 97.6%
5073383 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.72 63.0 5.86e-01 96.4% 95.2%
3895653 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.71 64.0 5.99e-01 100.0% 96.1%
3587465 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.71 63.0 6.20e-01 97.6% 98.9%
145199 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.69 61.0 5.85e-01 98.8% 95.9%
3294400 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.68 57.0 5.70e-01 97.6% 90.5%
3607467 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 55.0 5.41e-01 100.0% 83.3%
3529672 221.1.1.176 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26749 0.67 57.0 5.75e-01 97.6% 97.6%
2448270 221.1.1.33 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DWNN 0.66 55.0 5.41e-01 98.8% 86.4%
3594711 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 53.0 5.49e-01 95.2% 97.3%
4998477 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.65 53.0 5.55e-01 95.2% 98.7%
3503001 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 55.0 5.59e-01 92.8% 98.8%
3725268 221.1.1.110 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_2 0.65 56.0 5.61e-01 98.8% 94.1%
3277182 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.65 57.0 5.66e-01 98.8% 94.1%
3456623 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 51.0 5.15e-01 97.6% 84.7%
3446792 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 50.0 5.31e-01 96.4% 100.0%
3267702 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 56.0 5.56e-01 97.6% 96.5%
3602068 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 52.0 5.30e-01 95.2% 92.5%
3565026 221.1.1.175 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_RHG40_C 0.63 54.0 5.00e-01 94.0% 79.0%
3703472 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 52.0 5.02e-01 100.0% 80.0%
3709956 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.63 50.0 5.24e-01 95.2% 97.3%
4099083 221.1.1.117 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_UBAC1 0.63 56.0 5.38e-01 100.0% 87.4%
3742658 221.1.1.40 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 0.62 49.0 5.15e-01 97.6% 96.0%
4018064 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.62 50.0 5.15e-01 97.6% 93.8%
3893652 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 52.0 5.02e-01 94.0% 100.0%
3460512 221.1.1.33 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DWNN 0.62 54.0 5.16e-01 97.6% 85.3%
3894583 221.1.1.33 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DWNN 0.62 55.0 5.25e-01 98.8% 89.5%
3784048 221.1.1.7 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.62 52.0 5.22e-01 96.4% 98.8%
3251038 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.62 48.0 4.69e-01 96.4% 75.8%
3550614 221.1.1.77 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UCH_UBL1 0.61 53.0 4.75e-01 98.8% 69.2%
3707442 221.1.1.8 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd 0.61 54.0 4.07e-01 100.0% 45.7%
3177129 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 53.0 4.50e-01 100.0% 95.2%
3781796 221.1.1.40 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 0.61 50.0 4.88e-01 97.6% 83.3%
3801584 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.61 52.0 4.97e-01 96.4% 87.0%
6126 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.61 49.0 5.05e-01 100.0% 94.9%
3601932 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 51.0 5.13e-01 95.2% 94.1%
3266400 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.60 51.0 3.27e-01 100.0% 25.5%
3992518 221.1.1.200 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UNC80_C 0.59 51.0 5.01e-01 97.6% 93.3%
3782141 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 51.0 4.70e-01 97.6% 99.1%
3183594 221.1.1.95 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Dsc3_N 0.59 51.0 4.45e-01 96.4% 82.4%
3497076 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 50.0 4.95e-01 97.6% 96.7%
3794803 221.1.1.153 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_PRKD1_N 0.58 51.0 4.93e-01 97.6% 87.4%
3705388 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 49.0 4.65e-01 95.2% 83.8%
3266399 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 47.0 4.87e-01 92.8% 100.0%
3666530 221.1.1.111 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc 0.57 49.0 4.37e-01 100.0% 67.2%
3171708 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 48.0 4.83e-01 100.0% 95.3%
3254723 859.1.1.3 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 0.56 38.0 3.12e-01 71.1% 82.4%
3432035 221.1.1.111 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc 0.56 48.0 4.52e-01 100.0% 82.9%
3782877 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.53 46.0 4.38e-01 97.6% 92.0%
3711376 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 46.0 4.22e-01 100.0% 80.0%
4968436 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.12e-01 86.7% 39.1%