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IMGVR_UViG_3300006840_000202-3300006840-Ga0101790_1002722
Arc-VirIMGVR_UViG_3300006840_000202-3300006840-Ga0101790_1002722
Identity
- Kingdom:
- archaea
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-46
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 57.0 | 4.82e-01 | 75.6% | 50.7% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 54.0 | 4.99e-01 | 75.6% | 58.6% |
| 3a6pA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.73 | 57.0 | 3.06e-01 | 86.7% | 15.9% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.71 | 63.0 | 4.30e-01 | 100.0% | 70.4% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 48.0 | 4.10e-01 | 73.3% | 50.0% |
| 1uurA01 | 1.20.58.240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 | 0.70 | 60.0 | 4.52e-01 | 97.8% | 72.7% |
| 2h1jA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.69 | 50.0 | 2.80e-01 | 77.8% | 14.0% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 47.0 | 4.73e-01 | 75.6% | 70.2% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.69 | 47.0 | 3.16e-01 | 73.3% | 42.4% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.68 | 49.0 | 3.05e-01 | 75.6% | 73.9% |
| 1vp7A00 | 1.10.287.1040 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit | 0.67 | 55.0 | 4.88e-01 | 93.3% | 63.2% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 47.0 | 4.17e-01 | 75.6% | 53.8% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 47.0 | 3.95e-01 | 75.6% | 48.6% |
| 2d54A02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.65 | 46.0 | 3.54e-01 | 80.0% | 31.5% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.64 | 45.0 | 3.76e-01 | 75.6% | 43.8% |
| 2lniA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 50.0 | 3.72e-01 | 93.3% | 51.1% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 46.0 | 3.40e-01 | 100.0% | 61.3% |
| 1td6A01 | 1.20.1480.10 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 | 0.54 | 43.0 | 3.49e-01 | 100.0% | 65.7% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.53 | 43.0 | 3.76e-01 | 100.0% | 88.5% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.52 | 43.0 | 3.64e-01 | 95.6% | 56.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2476070 | 616.1.1.3 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Flu_NS1 | 0.91 | 64.0 | 6.89e-01 | 73.3% | 86.8% |
| 4022228 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.85 | 60.0 | 4.10e-01 | 75.6% | 22.7% |
| 3740829 | 192.19.1.3 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like › Wbp11 | 0.79 | 57.0 | 4.83e-01 | 77.8% | 46.7% |
| 5071097 | 3834.1.1.25 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 | 0.79 | 57.0 | 3.46e-01 | 77.8% | 13.7% |
| 3213525 | 192.19.1.0 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like | 0.79 | 53.0 | 5.54e-01 | 71.1% | 80.0% |
| 3294620 | 3755.3.1.290 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PPI_helical | 0.78 | 59.0 | 3.61e-01 | 82.2% | 16.9% |
| 4477969 | 192.19.1.1 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like › DUF896 | 0.77 | 54.0 | 5.27e-01 | 75.6% | 68.0% |
| 4081303 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.73 | 52.0 | 5.10e-01 | 77.8% | 78.0% |
| 4990972 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.72 | 46.0 | 3.47e-01 | 91.1% | 27.3% |
| 3937172 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.71 | 59.0 | 3.29e-01 | 93.3% | 9.8% |
| 3603861 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.71 | 48.0 | 3.63e-01 | 75.6% | 29.1% |
| 3502356 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.69 | 60.0 | 4.10e-01 | 97.8% | 45.8% |
| 3633651 | 109.4.1.555 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 | 0.66 | 56.0 | 2.96e-01 | 97.8% | 15.2% |
| 3324184 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.65 | 52.0 | 2.87e-01 | 95.6% | 11.6% |
| 4937749 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.65 | 51.0 | 3.08e-01 | 91.1% | 18.2% |
| 3657213 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.64 | 54.0 | 4.97e-01 | 95.6% | 75.0% |
| 3382752 | 109.4.1.1275 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 | 0.63 | 50.0 | 2.83e-01 | 97.8% | 6.6% |
| 5016327 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.61 | 49.0 | 4.31e-01 | 88.9% | 90.0% |
| 4496530 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.60 | 43.0 | 3.40e-01 | 82.2% | 36.8% |
| 3882393 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.59 | 49.0 | 3.52e-01 | 100.0% | 48.0% |
| 4973925 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.58 | 50.0 | 3.02e-01 | 97.8% | 44.4% |
| 3248563 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.55 | 39.0 | 3.54e-01 | 71.1% | 83.3% |
| 4878237 | 107.1.1.1 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C | 0.54 | 45.0 | 4.14e-01 | 97.8% | 78.7% |