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IMGVR_UViG_3300006866_000031-3300006866-Ga0079289_1011511
Arc-VirIMGVR_UViG_3300006866_000031-3300006866-Ga0079289_1011511
Identity
- Kingdom:
- archaea
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-57
Domain cluster:
representative
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044635 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.84 | 75.0 | 5.25e-01 | 100.0% | 35.4% |
| 5059627 | 3349.1.1.0 ↗ | a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain | 0.72 | 49.0 | 3.13e-01 | 71.9% | 39.6% |
| 4958682 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.60 | 41.0 | 3.21e-01 | 71.9% | 66.9% |
| 4630721 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.56 | 49.0 | 4.49e-01 | 96.5% | 88.0% |
| 3271281 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.52 | 40.0 | 3.85e-01 | 87.7% | 88.6% |
D2
medium
residues 58-111
Domain cluster:
rep: IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_32611_33789__D129-188
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.62 | 45.0 | 3.41e-01 | 79.6% | 48.3% |
| 4jzsA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 50.0 | 3.61e-01 | 100.0% | 56.3% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.57 | 40.0 | 4.08e-01 | 100.0% | 78.8% |
| 1xezA01 | 3.30.110.130 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain | 0.55 | 45.0 | 4.02e-01 | 100.0% | 63.0% |
| 1ms5B02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 48.0 | 3.11e-01 | 100.0% | 31.7% |
| 3nswA00 | 2.40.50.780 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 43.0 | 3.66e-01 | 100.0% | 66.0% |
| 1n7oA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.54 | 38.0 | 3.32e-01 | 100.0% | 48.2% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 40.0 | 3.17e-01 | 100.0% | 40.2% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 39.0 | 2.96e-01 | 88.9% | 61.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014572 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.97 | 92.0 | 6.23e-01 | 100.0% | 34.5% |
| 5002913 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.96 | 91.0 | 6.12e-01 | 100.0% | 32.4% |
| 4940866 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.95 | 90.0 | 6.05e-01 | 100.0% | 32.9% |
| 4940179 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.95 | 89.0 | 6.10e-01 | 100.0% | 35.0% |
| 4941280 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.94 | 88.0 | 6.28e-01 | 100.0% | 40.0% |
| 4010838 | 7000.1.1.1 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 | 0.93 | 88.0 | 6.17e-01 | 100.0% | 37.9% |
| 3286638 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.92 | 85.0 | 5.79e-01 | 100.0% | 33.5% |
| 5021605 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.90 | 83.0 | 5.70e-01 | 100.0% | 33.9% |
| 5044635 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.85 | 77.0 | 5.28e-01 | 100.0% | 34.9% |
| 4945101 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.71 | 62.0 | 4.30e-01 | 100.0% | 34.4% |
| 5065332 | 2.1.1.21 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 | 0.63 | 54.0 | 4.95e-01 | 100.0% | 74.7% |
| 4948212 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 54.0 | 4.89e-01 | 100.0% | 74.7% |
| 5072502 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 51.0 | 5.06e-01 | 98.1% | 96.6% |
| 4987320 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 51.0 | 4.97e-01 | 100.0% | 96.7% |
| 3242784 | 2.1.1.218 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_6th | 0.61 | 51.0 | 4.81e-01 | 100.0% | 91.4% |
| 5002450 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 49.0 | 4.93e-01 | 96.3% | 98.2% |
| 4978946 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 51.0 | 4.97e-01 | 98.1% | 91.7% |
| 3711282 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 51.0 | 5.09e-01 | 98.1% | 98.2% |
| 5080835 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 49.0 | 4.88e-01 | 96.3% | 96.4% |
| 3771117 | 2.1.1.237 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30958 | 0.59 | 47.0 | 4.46e-01 | 94.4% | 82.9% |
| 5017215 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 48.0 | 4.84e-01 | 98.1% | 100.0% |
| 5030571 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 49.0 | 4.46e-01 | 100.0% | 74.7% |
| 3655401 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 46.0 | 4.10e-01 | 100.0% | 82.2% |
| 5056707 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 44.0 | 4.48e-01 | 96.3% | 100.0% |
| 4798576 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 48.0 | 3.92e-01 | 100.0% | 72.2% |
| 5040417 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 44.0 | 4.41e-01 | 96.3% | 100.0% |
| 3963299 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.53 | 43.0 | 3.43e-01 | 100.0% | 44.5% |
| 5028053 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 40.0 | 4.00e-01 | 87.0% | 90.9% |
| 4364215 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 46.0 | 3.61e-01 | 100.0% | 54.2% |
| 5054133 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.44e-01 | 88.9% | 94.4% |