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IMGVR_UViG_3300006869_000250-3300006869-Ga0075477_100006346
Arc-VirIMGVR_UViG_3300006869_000250-3300006869-Ga0075477_100006346
Identity
- Kingdom:
- archaea
Quality
75.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-153
Domain cluster:
rep: IMGVR_UViG_3300042101_000503-3300042101-Ga0453250_002817_1893_3110__D287-391
D2
high
residues 168-331
Domain cluster:
rep: IMGVR_UViG_3300023176_006200-3300023176-Ga0255772_100237071__D168-331
D3
medium
residues 342-444_479-511_662-701_974-1005
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05268.19 best | GP38 | 42.6 | 1.10e-10 | 93.3% | 56.8% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.57 | 35.0 | 3.83e-01 | 100.0% | 73.8% |
| 1ea0A04 | 2.160.20.60 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Glutamate synthase, alpha subunit, C-terminal domain | 0.57 | 39.0 | 3.55e-01 | 97.6% | 53.5% |
| 8tmsA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.51 | 47.0 | 4.28e-01 | 100.0% | 98.2% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.51 | 44.0 | 3.29e-01 | 100.0% | 37.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047056 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.64 | 44.0 | 4.32e-01 | 99.5% | 65.0% |
| 3964913 | 207.2.1.10 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin | 0.56 | 38.0 | 4.50e-01 | 96.6% | 99.3% |
| 4235162 | 207.2.1.114 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › VID | 0.55 | 52.0 | 4.04e-01 | 100.0% | 54.1% |
| 3461265 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.51 | 43.0 | 4.31e-01 | 93.8% | 86.7% |
D4
medium
residues 445-463_512-570
D5
medium
residues 464-478_571-661
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cyxA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.50 | 35.0 | 3.54e-01 | 72.6% | 96.3% |
D6
medium
residues 702-783_804-826
Domain cluster:
representative