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IMGVR_UViG_3300006869_000250-3300006869-Ga0075477_100006346

Arc-Vir

IMGVR_UViG_3300006869_000250-3300006869-Ga0075477_100006346

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-153
PDB
D2 high residues 168-331
PDB
D3 medium residues 342-444_479-511_662-701_974-1005
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05268.19 best GP38 42.6 1.10e-10 93.3% 56.8%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yuhA01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.57 35.0 3.83e-01 100.0% 73.8%
1ea0A04 2.160.20.60 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Glutamate synthase, alpha subunit, C-terminal domain 0.57 39.0 3.55e-01 97.6% 53.5%
8tmsA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 47.0 4.28e-01 100.0% 98.2%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 44.0 3.29e-01 100.0% 37.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047056 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.64 44.0 4.32e-01 99.5% 65.0%
3964913 207.2.1.10 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin 0.56 38.0 4.50e-01 96.6% 99.3%
4235162 207.2.1.114 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › VID 0.55 52.0 4.04e-01 100.0% 54.1%
3461265 207.2.1.4 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.51 43.0 4.31e-01 93.8% 86.7%
D4 medium residues 445-463_512-570
PDB
D5 medium residues 464-478_571-661
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 35.0 3.54e-01 72.6% 96.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3800059 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.47e-01 74.5% 85.4%
D6 medium residues 702-783_804-826
PDB
Domain cluster: representative