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IMGVR_UViG_3300006894_000026-3300006894-Ga0079215_100018989

Arc-Vir

IMGVR_UViG_3300006894_000026-3300006894-Ga0079215_100018989

Identity

Kingdom:
archaea

Quality

68.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-65
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 45.0 2.93e-01 72.5% 57.3%
2ebqA00 4.10.1060.10 Few Secondary Structures › Irregular › ZNF265 like › Zinc finger, RanBP2-type 0.63 42.0 4.37e-01 70.6% 78.7%
4ab5B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 46.0 3.65e-01 86.3% 93.0%
4xxbB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 41.0 4.34e-01 82.4% 88.1%
1olzA02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.59 44.0 4.35e-01 84.3% 78.9%
3al9A02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.58 43.0 4.30e-01 82.4% 87.0%
3ol2B02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.58 43.0 4.47e-01 84.3% 89.6%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 36.0 2.84e-01 72.5% 47.5%
1totA00 3.30.60.90 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type 0.53 39.0 3.94e-01 94.1% 82.7%
1kk1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 2.85e-01 92.2% 28.1%
4aycA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 40.0 3.48e-01 90.2% 55.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027411 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.70 57.0 3.23e-01 88.2% 61.1%
3709218 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 47.0 3.75e-01 74.5% 97.2%
5076714 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 48.0 4.76e-01 82.4% 72.7%
3609074 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 45.0 4.68e-01 72.5% 86.7%
3709220 4138.1.1.0 ↗ few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat 0.65 44.0 4.31e-01 70.6% 69.1%
2880112 375.1.1.4 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP 0.65 39.0 4.32e-01 76.5% 78.9%
3700242 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.65 49.0 5.02e-01 84.3% 90.0%
3435899 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 38.0 4.44e-01 78.4% 96.7%
3609075 375.1.1.4 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP 0.64 48.0 3.95e-01 84.3% 87.0%
3487979 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 36.0 4.16e-01 78.4% 96.7%
5059159 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 45.0 3.59e-01 82.4% 46.9%
3176238 376.1.2.35 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF27641 0.60 43.0 2.96e-01 76.5% 75.5%
5068448 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 45.0 3.53e-01 82.4% 46.1%
3388521 375.1.1.219 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4H2 0.60 37.0 4.23e-01 80.4% 100.0%
3517439 375.1.1.25 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tfb4 0.60 42.0 4.08e-01 86.3% 65.0%
3479896 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 39.0 4.18e-01 80.4% 87.5%
2117616 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 43.0 4.19e-01 82.4% 96.6%
3177549 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.58 40.0 3.84e-01 74.5% 71.7%
3500555 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.57 43.0 4.41e-01 88.2% 96.0%
3702375 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.57 39.0 2.68e-01 78.4% 19.5%
3595166 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 2.98e-01 76.5% 73.8%
3489122 389.6.1.2 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like 0.55 36.0 2.85e-01 78.4% 28.3%
5037576 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.55 42.0 2.50e-01 88.2% 62.8%
4944040 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.54 38.0 4.00e-01 78.4% 100.0%
3881978 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 3.31e-01 84.3% 55.3%
3614055 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.53 38.0 2.61e-01 78.4% 32.4%