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IMGVR_UViG_3300006904_000295-3300006904-Ga0075424_1000431054
Arc-VirIMGVR_UViG_3300006904_000295-3300006904-Ga0075424_1000431054
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-129_263-290
Domain cluster:
rep: putative_serine_protease__YP_002296267__Emiliania_huxleyi_virus_86__181082__D17-107_209-251
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f1sB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.79 | 47.0 | 6.13e-01 | 77.1% | 100.0% |
| 3stjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.77 | 41.0 | 5.65e-01 | 75.2% | 97.6% |
| 5lpeB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.75 | 44.0 | 5.79e-01 | 77.7% | 100.0% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 47.0 | 5.77e-01 | 78.3% | 99.0% |
| 4lk4A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 45.0 | 5.69e-01 | 72.6% | 100.0% |
| 2oq5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.72 | 46.0 | 5.69e-01 | 78.3% | 99.0% |
| 1qa7A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 49.0 | 5.75e-01 | 85.4% | 100.0% |
| 1eq9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 47.0 | 5.71e-01 | 80.3% | 100.0% |
| 5fcrC02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 47.0 | 5.73e-01 | 78.3% | 100.0% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 47.0 | 5.62e-01 | 79.6% | 100.0% |
| 1m9uA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 47.0 | 5.60e-01 | 78.3% | 100.0% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.68 | 18.0 | 3.73e-01 | 80.3% | 97.3% |
| 1ltoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 46.0 | 5.48e-01 | 78.3% | 99.1% |
| 2b9lA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 49.0 | 4.90e-01 | 82.2% | 76.4% |
| 2qy0B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 44.0 | 5.25e-01 | 81.5% | 100.0% |
| 2olgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 49.0 | 5.43e-01 | 78.3% | 99.2% |
| 1dx5M02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 47.0 | 5.36e-01 | 80.3% | 100.0% |
| 1a5iA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 46.0 | 5.31e-01 | 79.0% | 100.0% |
| 5lhrA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 46.0 | 5.29e-01 | 78.3% | 100.0% |
| 4kkdB04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 45.0 | 5.03e-01 | 81.5% | 100.0% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 39.0 | 4.33e-01 | 72.6% | 87.9% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.55 | 33.0 | 3.96e-01 | 73.9% | 90.2% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 38.0 | 4.31e-01 | 72.6% | 94.1% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 27.0 | 2.90e-01 | 73.9% | 54.2% |
| 1cd9D01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 29.0 | 3.35e-01 | 85.4% | 72.0% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.54 | 32.0 | 3.74e-01 | 72.6% | 83.5% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 37.0 | 3.69e-01 | 72.6% | 74.4% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 37.0 | 3.76e-01 | 73.9% | 88.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3412488 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.65 | 55.0 | 4.44e-01 | 87.9% | 93.6% |
| 3927088 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.65 | 53.0 | 4.30e-01 | 84.7% | 95.2% |
| 3475207 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.64 | 53.0 | 4.13e-01 | 86.6% | 92.3% |
| 3900731 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.64 | 55.0 | 4.51e-01 | 91.1% | 93.8% |
| 3892775 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.64 | 53.0 | 4.23e-01 | 87.3% | 90.8% |
| 3397664 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.64 | 51.0 | 4.35e-01 | 83.4% | 95.9% |
| 3991786 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 51.0 | 4.07e-01 | 83.4% | 94.4% |
| 3411245 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 51.0 | 4.17e-01 | 83.4% | 95.2% |
| 3414656 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 52.0 | 4.44e-01 | 85.4% | 97.5% |
| 3403600 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 53.0 | 4.26e-01 | 87.9% | 93.4% |
| 3956586 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.63 | 53.0 | 4.58e-01 | 89.8% | 91.7% |
| 3389148 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 51.0 | 4.23e-01 | 84.7% | 95.4% |
| 3388754 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 51.0 | 4.34e-01 | 86.0% | 94.0% |
| 3407934 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 52.0 | 4.40e-01 | 88.5% | 95.3% |
| 3727317 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.61 | 51.0 | 4.09e-01 | 88.5% | 90.3% |
| 3412624 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.61 | 50.0 | 4.28e-01 | 85.4% | 96.6% |
| 3407835 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 46.0 | 3.85e-01 | 84.7% | 92.3% |
| 2706608 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.55 | 38.0 | 4.15e-01 | 73.2% | 86.5% |
| 4331393 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 38.0 | 3.98e-01 | 73.2% | 85.0% |
| 4929515 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.52 | 38.0 | 3.95e-01 | 73.9% | 92.4% |
| 4949072 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.50 | 36.0 | 3.79e-01 | 74.5% | 80.0% |
| 5005662 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 3.48e-01 | 77.1% | 69.0% |
D2
medium
residues 130-262
Domain cluster:
rep: IMGVR_UViG_3300005520_000196-3300005520-Ga0066864_100047611__D25-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13365.13 best | Trypsin_2 | 31.0 | 5.70e-07 | 64.7% | 44.1% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.88 | 57.0 | 6.12e-01 | 100.0% | 75.7% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.82 | 58.0 | 4.88e-01 | 100.0% | 47.3% |
| 1lvbA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.81 | 50.0 | 5.56e-01 | 97.0% | 76.9% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.79 | 52.0 | 5.94e-01 | 100.0% | 86.5% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 53.0 | 5.98e-01 | 100.0% | 88.6% |
| 2hlcA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 57.0 | 5.84e-01 | 100.0% | 88.1% |
| 1boqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 49.0 | 5.41e-01 | 97.0% | 87.9% |
| 2zgcA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 55.0 | 5.71e-01 | 98.5% | 88.9% |
| 1k3rA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 20.0 | 2.98e-01 | 85.7% | 57.6% |
| 5brrE01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 54.0 | 5.40e-01 | 98.5% | 89.6% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 39.0 | 4.06e-01 | 94.7% | 83.9% |
| 2kzbA00 | 2.60.40.2830 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 33.0 | 3.53e-01 | 96.2% | 72.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3276425 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.86 | 63.0 | 4.76e-01 | 100.0% | 34.7% |
| 3772106 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.85 | 62.0 | 5.06e-01 | 100.0% | 44.0% |
| 3867774 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.85 | 62.0 | 4.00e-01 | 100.0% | 19.2% |
| 3545090 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.85 | 61.0 | 5.07e-01 | 100.0% | 45.0% |
| 3452728 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.82 | 58.0 | 4.92e-01 | 100.0% | 46.8% |
| 3258480 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.82 | 61.0 | 4.57e-01 | 100.0% | 34.0% |
| 3672433 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.81 | 52.0 | 3.93e-01 | 100.0% | 30.0% |
| 3428386 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.78 | 50.0 | 3.98e-01 | 100.0% | 34.4% |
| 3969197 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.75 | 56.0 | 4.36e-01 | 100.0% | 38.5% |
| 3276050 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.75 | 56.0 | 4.59e-01 | 100.0% | 44.6% |
| 3783835 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.74 | 65.0 | 5.13e-01 | 100.0% | 47.2% |
| 5016520 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.74 | 58.0 | 4.68e-01 | 100.0% | 46.0% |
| 3637221 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.73 | 57.0 | 4.40e-01 | 100.0% | 40.4% |
| 3956586 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.72 | 55.0 | 4.41e-01 | 100.0% | 43.3% |
| 5053427 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.66 | 58.0 | 4.62e-01 | 100.0% | 50.4% |
| 3403377 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 54.0 | 4.27e-01 | 100.0% | 47.2% |
| 3704634 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.63 | 59.0 | 4.62e-01 | 100.0% | 50.2% |
| 3889968 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.50 | 36.0 | 2.73e-01 | 74.4% | 33.3% |