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IMGVR_UViG_3300006918_000092-3300006918-Ga0079216_100016539

Arc-Vir

IMGVR_UViG_3300006918_000092-3300006918-Ga0079216_100016539

Identity

Kingdom:
archaea

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.79 41.0 3.74e-01 86.8% 40.3%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.78 55.0 4.09e-01 100.0% 30.5%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.75 55.0 4.66e-01 100.0% 48.2%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.71 52.0 3.96e-01 100.0% 33.6%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.68 52.0 3.95e-01 100.0% 36.7%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.67 58.0 3.67e-01 100.0% 35.0%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.66 50.0 4.83e-01 83.0% 86.9%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.65 56.0 3.56e-01 100.0% 80.9%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.64 45.0 4.01e-01 94.3% 52.6%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.63 50.0 2.99e-01 90.6% 98.8%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 36.0 3.86e-01 84.9% 66.7%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.60 54.0 3.58e-01 100.0% 34.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 54.0 4.05e-01 100.0% 97.6%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 3.81e-01 98.1% 97.1%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 51.0 4.10e-01 100.0% 61.3%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 3.52e-01 100.0% 41.9%
1b12A02 2.170.230.10 Mainly Beta › Beta Complex › Signal Peptidase I; Chain: A, domain 2 › 0.57 40.0 3.62e-01 92.5% 54.1%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.56 44.0 3.98e-01 96.2% 63.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.98e-01 98.1% 78.9%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 2.82e-01 100.0% 29.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588455 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.84 56.0 5.11e-01 100.0% 52.9%
5081796 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.84 59.0 4.02e-01 100.0% 22.9%
3404874 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.80 58.0 3.80e-01 100.0% 19.5%
3474457 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.80 56.0 4.54e-01 100.0% 41.1%
4998404 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 46.0 4.39e-01 86.8% 55.0%
5039218 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.70 64.0 4.70e-01 100.0% 93.8%
5082343 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.70 56.0 3.62e-01 100.0% 20.0%
3392283 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.69 53.0 4.15e-01 84.9% 68.7%
5004521 4317.1.1.0 ↗ a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.64 48.0 4.66e-01 83.0% 91.7%
3984091 3180.1.1.1 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.64 50.0 4.01e-01 86.8% 76.2%
5063295 331.16.1.1 ↗ a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.63 50.0 4.09e-01 100.0% 47.0%
5024247 210.1.1.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd 0.62 55.0 3.69e-01 100.0% 35.4%
4002730 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.61 55.0 3.67e-01 100.0% 49.0%
3604107 210.1.1.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd 0.61 55.0 3.66e-01 100.0% 34.0%
1499696 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.56 44.0 4.05e-01 96.2% 66.7%
5083781 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 46.0 3.23e-01 100.0% 38.2%
3641797 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 39.0 3.54e-01 90.6% 73.8%