←Back to structures
IMGVR_UViG_3300006926_000494-3300006926-Ga0098057_10016836
Arc-VirIMGVR_UViG_3300006926_000494-3300006926-Ga0098057_10016836
Identity
- Kingdom:
- archaea
Quality
68.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-58
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16724.12 best | T4-gp15_tss | 28.4 | 1.20e-06 | 97.9% | 17.9% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r78A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 36.0 | 2.91e-01 | 81.2% | 28.1% |
| 2jsxA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.63 | 36.0 | 3.19e-01 | 79.2% | 35.2% |
| 4gniA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.60 | 42.0 | 3.52e-01 | 87.5% | 41.9% |
| 5umbA02 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.59 | 41.0 | 3.60e-01 | 87.5% | 48.0% |
| 6rzqA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.58 | 42.0 | 3.50e-01 | 83.3% | 44.7% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 34.0 | 3.05e-01 | 85.4% | 37.1% |
| 1k32A05 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 48.0 | 3.18e-01 | 97.9% | 53.9% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.56 | 44.0 | 2.61e-01 | 100.0% | 25.8% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 41.0 | 2.86e-01 | 81.2% | 99.4% |
| 3a32A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.56 | 41.0 | 2.98e-01 | 100.0% | 27.7% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.55 | 40.0 | 2.68e-01 | 79.2% | 22.4% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.53 | 44.0 | 2.66e-01 | 100.0% | 75.5% |
| 6zd1A01 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.53 | 43.0 | 3.08e-01 | 95.8% | 40.8% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.53 | 40.0 | 2.56e-01 | 87.5% | 57.7% |
| 4lecA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 36.0 | 2.48e-01 | 79.2% | 41.1% |
| 3gzsA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 38.0 | 2.22e-01 | 83.3% | 8.1% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 34.0 | 2.12e-01 | 87.5% | 11.8% |
| 3j7yU00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 39.0 | 3.15e-01 | 93.8% | 52.3% |
| 6zwwC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 2.98e-01 | 100.0% | 59.5% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 39.0 | 2.56e-01 | 97.9% | 39.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978722 | 3261.1.1.2 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_1st | 0.61 | 33.0 | 3.12e-01 | 85.4% | 41.7% |
| 3937147 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.60 | 48.0 | 2.92e-01 | 95.8% | 43.2% |
| 4442629 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.59 | 49.0 | 3.20e-01 | 100.0% | 72.4% |
| 3428671 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 40.0 | 3.66e-01 | 93.8% | 50.0% |
| 3784212 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 42.0 | 3.34e-01 | 79.2% | 94.3% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.58 | 45.0 | 2.67e-01 | 89.6% | 56.7% |
| 3285877 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 42.0 | 2.73e-01 | 81.2% | 25.8% |
| 3883169 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.56 | 47.0 | 3.00e-01 | 97.9% | 29.6% |
| 3164240 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.55 | 39.0 | 3.53e-01 | 83.3% | 52.9% |
| 5024728 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.54 | 45.0 | 2.94e-01 | 100.0% | 68.9% |
| 4024944 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 41.0 | 2.64e-01 | 91.7% | 71.4% |
| 3330041 | 101.1.2.303 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPC5 | 0.54 | 42.0 | 3.12e-01 | 95.8% | 83.2% |
| 1207585 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.54 | 41.0 | 3.51e-01 | 91.7% | 50.6% |
| 3212521 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 43.0 | 2.71e-01 | 97.9% | 37.3% |
| 3739576 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.54 | 34.0 | 3.23e-01 | 89.6% | 56.4% |
| 3699463 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 40.0 | 2.61e-01 | 81.2% | 20.0% |
| 2391543 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 40.0 | 2.70e-01 | 81.2% | 27.4% |
| 5044544 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 45.0 | 2.89e-01 | 93.8% | 85.3% |
| 3887540 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 43.0 | 2.47e-01 | 97.9% | 15.0% |
| 3784357 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.53 | 40.0 | 2.64e-01 | 85.4% | 35.8% |
| 4645961 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.53 | 37.0 | 2.50e-01 | 72.9% | 37.9% |
| 4956520 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.53 | 36.0 | 2.96e-01 | 77.1% | 87.3% |
| 5018509 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.53 | 37.0 | 2.39e-01 | 75.0% | 15.7% |
| 3860270 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.52 | 43.0 | 2.70e-01 | 95.8% | 32.5% |
| 3893333 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.52 | 39.0 | 2.74e-01 | 97.9% | 22.6% |
| 3599395 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 39.0 | 2.38e-01 | 91.7% | 25.5% |
| 4171935 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.52 | 37.0 | 2.63e-01 | 79.2% | 25.0% |
| 3921728 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.52 | 37.0 | 2.85e-01 | 77.1% | 37.4% |
| 3990521 | 5050.1.1.31 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr | 0.52 | 39.0 | 2.80e-01 | 91.7% | 37.7% |
| 3786266 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.51 | 39.0 | 2.77e-01 | 93.8% | 56.8% |
| 4149277 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.51 | 39.0 | 2.92e-01 | 91.7% | 43.4% |
| 2101213 | 304.51.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 | 0.51 | 34.0 | 3.35e-01 | 70.8% | 75.9% |
| 3519143 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 44.0 | 2.71e-01 | 100.0% | 43.3% |
| 3468397 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 38.0 | 2.96e-01 | 85.4% | 94.2% |
| None | — | 0.51 | 35.0 | 2.31e-01 | 85.4% | 16.2% | |
| 3240224 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.50 | 43.0 | 3.06e-01 | 100.0% | 73.5% |