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IMGVR_UViG_3300006928_003110-3300006928-Ga0098041_100341310
Arc-VirIMGVR_UViG_3300006928_003110-3300006928-Ga0098041_100341310
Identity
- Kingdom:
- archaea
Quality
88.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-94
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13946.12 best | DUF4214 | 41.3 | 1.80e-10 | 68.5% | 75.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.61 | 39.0 | 4.56e-01 | 70.8% | 100.0% |
| 3trkA01 | 3.90.70.110 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Alphavirus nsP2 protease domain | 0.60 | 46.0 | 4.09e-01 | 84.3% | 91.2% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.56 | 43.0 | 3.54e-01 | 82.0% | 90.9% |
| 5a2gA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 47.0 | 3.02e-01 | 97.8% | 84.6% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.55 | 45.0 | 4.12e-01 | 91.0% | 84.7% |
| 7pweA02 | 3.90.460.10 | Alpha Beta › Alpha-Beta Complex › Ferredoxin Thioredoxin Reductase › Ferredoxin thioredoxin reductase catalytic beta subunit | 0.53 | 43.0 | 4.06e-01 | 89.9% | 86.1% |
| 1jcfA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.51 | 35.0 | 3.71e-01 | 70.8% | 81.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254545 | 103.11.1.0 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related | 0.85 | 51.0 | 6.40e-01 | 70.8% | 98.2% |
| 4853596 | 3144.1.1.1 ↗ | alpha arrays › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS_linker_poly | 0.74 | 52.0 | 5.21e-01 | 82.0% | 71.1% |
| 179205 | 3144.1.1.1 ↗ | alpha arrays › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS_linker_poly | 0.71 | 49.0 | 4.17e-01 | 77.5% | 46.7% |
| 5077829 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 47.0 | 5.05e-01 | 74.2% | 86.7% |
| 4605995 | 108.1.1.40 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › STAT_linker | 0.66 | 45.0 | 4.14e-01 | 70.8% | 74.2% |
| 3917133 | 108.1.1.40 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › STAT_linker | 0.61 | 46.0 | 4.28e-01 | 79.8% | 71.8% |
| 5000667 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.58 | 48.0 | 3.98e-01 | 88.8% | 80.0% |
| 4012006 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 39.0 | 4.06e-01 | 74.2% | 75.3% |
| 4118420 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 26.0 | 2.98e-01 | 73.0% | 53.8% |
| 3269970 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.56 | 38.0 | 3.68e-01 | 70.8% | 75.2% |
| 2833148 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.55 | 38.0 | 3.53e-01 | 71.9% | 65.2% |
| 2858351 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.55 | 38.0 | 3.51e-01 | 70.8% | 68.1% |
| 3938247 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.55 | 39.0 | 2.97e-01 | 74.2% | 69.5% |
| 3690980 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.54 | 37.0 | 3.56e-01 | 70.8% | 71.4% |
| 3704867 | 108.1.1.44 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › FCaBP_EF-hand | 0.54 | 47.0 | 3.05e-01 | 100.0% | 46.6% |
| 3461263 | 386.1.1.3 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF | 0.53 | 36.0 | 3.14e-01 | 73.0% | 44.3% |
| 4978532 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 39.0 | 3.36e-01 | 82.0% | 89.3% |