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IMGVR_UViG_3300007072_000039-3300007072-Ga0073932_100272726

Arc-Vir

IMGVR_UViG_3300007072_000039-3300007072-Ga0073932_100272726

Identity

Kingdom:
archaea

Quality

89.5 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-106
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 44.0 3.25e-01 100.0% 29.1%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 42.0 2.88e-01 100.0% 20.8%
2w9mB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 46.0 4.41e-01 89.6% 98.8%
3b59A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 42.0 3.56e-01 85.1% 45.5%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.73e-01 85.1% 58.9%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.54 40.0 3.38e-01 82.1% 58.3%
4gdnC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 2.75e-01 89.6% 83.6%
5brrE01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 40.0 3.27e-01 83.6% 100.0%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 37.0 3.16e-01 89.6% 42.5%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.55e-01 98.5% 94.4%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.60e-01 100.0% 56.9%
3e0rB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 44.0 3.72e-01 97.0% 99.2%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 37.0 3.63e-01 76.1% 69.3%
5bpdA02 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.51 37.0 2.98e-01 79.1% 74.1%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 3.85e-01 100.0% 70.0%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.69e-01 100.0% 78.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306543 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.67 39.0 3.89e-01 98.5% 55.7%
3728082 4357.1.1.7 ↗ beta barrels › WWE domain › WWE domain › WWE domain › DUF7131 0.61 53.0 5.07e-01 98.5% 98.8%
3784671 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 51.0 3.90e-01 100.0% 76.8%
4927614 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.31e-01 100.0% 69.1%
3557100 206.1.3.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.56 34.0 2.42e-01 100.0% 17.0%
3381618 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.97e-01 100.0% 62.4%
4026222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.78e-01 100.0% 71.0%
3215907 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 41.0 2.81e-01 83.6% 28.1%
3629405 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.54 40.0 4.25e-01 97.0% 100.0%
3574384 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 4.25e-01 97.0% 100.0%
4076295 375.1.1.88 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.54 36.0 3.94e-01 95.5% 85.5%
3671194 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.03e-01 100.0% 72.4%
3709735 109.4.1.2084 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7051 0.53 36.0 2.51e-01 73.1% 24.2%
4029844 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.53 36.0 3.40e-01 71.6% 81.2%
4993827 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.52 44.0 4.21e-01 100.0% 85.0%
3902169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.68e-01 100.0% 70.4%
3172534 304.9.1.90 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF29326 0.51 33.0 2.99e-01 86.6% 42.9%
3900211 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 40.0 2.73e-01 91.0% 62.8%
3172569 220.1.1.245 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29445 0.51 44.0 3.58e-01 100.0% 54.8%
3215596 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 42.0 2.90e-01 95.5% 25.7%
3721465 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.51 38.0 3.02e-01 83.6% 50.7%