←Back to structures
IMGVR_UViG_3300007164_000022-3300007164-Ga0099836_1276641
Arc-VirIMGVR_UViG_3300007164_000022-3300007164-Ga0099836_1276641
Identity
- Kingdom:
- archaea
Quality
92.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 321-471
Domain cluster:
rep: MK511022.1__QBI81344.1__X__00002__D567-730_755-767
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01804.24 best | Penicil_amidase | 54.4 | 1.70e-14 | 100.0% | 20.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cp9B03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.82 | 70.0 | 6.83e-01 | 88.7% | 98.1% |
| 3k3wB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.82 | 70.0 | 6.89e-01 | 88.7% | 98.1% |
| 4hstB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.77 | 63.0 | 6.75e-01 | 87.4% | 100.0% |
| 1fm2B02 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.69 | 55.0 | 5.18e-01 | 100.0% | 69.1% |
| 4wksC03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.57 | 53.0 | 4.98e-01 | 100.0% | 81.9% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 29.0 | 3.83e-01 | 78.1% | 93.7% |
| 1eqfA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 28.0 | 3.10e-01 | 81.5% | 64.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010060 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.97 | 95.0 | 5.72e-01 | 100.0% | 19.4% |
| 4980003 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.89 | 85.0 | 5.54e-01 | 100.0% | 28.5% |
| 5024443 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.88 | 84.0 | 5.19e-01 | 100.0% | 22.9% |
| 4980065 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.88 | 84.0 | 5.19e-01 | 100.0% | 21.6% |
| 3970199 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.87 | 83.0 | 5.09e-01 | 100.0% | 20.8% |
| 3969087 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.86 | 83.0 | 5.03e-01 | 100.0% | 19.2% |
| 5025509 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.86 | 82.0 | 5.02e-01 | 100.0% | 20.7% |
| 5007926 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.84 | 78.0 | 4.80e-01 | 100.0% | 19.7% |
| 3970384 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.82 | 78.0 | 4.80e-01 | 100.0% | 24.2% |
| 3281462 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.81 | 74.0 | 4.66e-01 | 100.0% | 20.3% |
| 4383075 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.78 | 73.0 | 4.52e-01 | 100.0% | 23.5% |
| 4132290 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.77 | 73.0 | 4.52e-01 | 100.0% | 20.4% |
| 4767936 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.77 | 72.0 | 4.81e-01 | 100.0% | 39.0% |
| 4378403 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.73 | 69.0 | 4.28e-01 | 100.0% | 24.9% |
| 4485316 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.60 | 55.0 | 3.50e-01 | 100.0% | 26.6% |
| 3855039 | 3050.1.1.18 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › SCAF11-like_C | 0.53 | 27.0 | 3.31e-01 | 78.8% | 76.7% |
| 3732963 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.53 | 41.0 | 3.37e-01 | 80.8% | 88.4% |
| 4981595 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 30.0 | 3.55e-01 | 78.1% | 85.0% |
D2
medium
residues 32-105_172-209_256-317_500-559
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01804.24 best | Penicil_amidase | 27.9 | 1.80e-06 | 32.9% | 9.6% |
| PF01804.24 | Penicil_amidase | 82.5 | 5.50e-23 | 32.5% | 11.1% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hsrB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.92 | 88.0 | 7.62e-01 | 97.4% | 99.7% |
| 6nvyB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.91 | 83.0 | 7.53e-01 | 93.6% | 99.7% |
| 1ajqB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.90 | 82.0 | 7.41e-01 | 93.6% | 99.7% |
| 6dxwA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.81 | 65.0 | 6.60e-01 | 81.6% | 99.1% |
| 1fm2B01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.78 | 73.0 | 7.02e-01 | 97.0% | 99.6% |
| 4yfbC01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.77 | 73.0 | 6.71e-01 | 97.0% | 99.7% |
| 3gvzA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.77 | 73.0 | 7.05e-01 | 98.3% | 98.0% |
| 4bthB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.77 | 72.0 | 6.75e-01 | 97.0% | 99.6% |
| 2bjfA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.69 | 65.0 | 5.82e-01 | 99.1% | 98.4% |
| 5hkeA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.68 | 63.0 | 5.73e-01 | 98.7% | 98.7% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 37.0 | 3.87e-01 | 74.4% | 97.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010060 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.97 | 96.0 | 6.28e-01 | 99.6% | 67.9% |
| 4980003 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.96 | 89.0 | 6.41e-01 | 94.9% | 93.0% |
| 5024443 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.95 | 90.0 | 6.03e-01 | 96.6% | 71.8% |
| 5025509 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.95 | 92.0 | 6.08e-01 | 99.6% | 68.4% |
| 4980065 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.95 | 92.0 | 6.17e-01 | 99.6% | 74.8% |
| 3970384 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.94 | 89.0 | 5.86e-01 | 97.0% | 73.3% |
| 4132290 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.93 | 89.0 | 5.95e-01 | 98.3% | 70.2% |
| 3281462 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.93 | 89.0 | 5.98e-01 | 97.4% | 70.2% |
| 3970199 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.93 | 89.0 | 5.91e-01 | 98.7% | 70.4% |
| 5007926 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.92 | 90.0 | 6.04e-01 | 100.0% | 72.0% |
| 3969087 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.92 | 89.0 | 5.86e-01 | 99.6% | 68.1% |
| 2507516 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.92 | 89.0 | 6.50e-01 | 99.6% | 99.8% |
| 5071164 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.92 | 89.0 | 5.97e-01 | 100.0% | 71.8% |
| 4378403 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.91 | 89.0 | 5.88e-01 | 99.6% | 69.4% |
| 4383075 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.91 | 89.0 | 5.89e-01 | 100.0% | 71.6% |
| 423731 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.91 | 88.0 | 6.05e-01 | 100.0% | 75.9% |
| 4767936 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.91 | 85.0 | 6.24e-01 | 96.6% | 99.8% |
| 5040912 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.90 | 87.0 | 5.81e-01 | 99.6% | 74.5% |
| 4485316 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.90 | 87.0 | 5.85e-01 | 99.6% | 74.0% |
| 4049905 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.90 | 85.0 | 5.78e-01 | 98.3% | 76.4% |
| 3250124 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.77 | 71.0 | 5.70e-01 | 95.7% | 62.7% |
| 4964269 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.75 | 68.0 | 6.68e-01 | 95.3% | 99.2% |
| 3639490 | 210.1.2.7 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › NAAA-beta | 0.73 | 64.0 | 5.27e-01 | 90.6% | 71.3% |
| 3076049 | 210.1.2.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH | 0.67 | 63.0 | 5.57e-01 | 99.1% | 93.6% |
| 3227528 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.51 | 11.0 | 2.47e-01 | 84.6% | 100.0% |
| 4476840 | 11.1.1.156 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG3 | 0.50 | 18.0 | 2.70e-01 | 91.5% | 72.6% |
D3
medium
residues 106-171_210-255
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01804.24 best | Penicil_amidase | 24.6 | 1.80e-05 | 59.8% | 9.3% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 26.0 | 3.45e-01 | 95.5% | 91.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010060 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.99 | 97.0 | 5.57e-01 | 100.0% | 19.4% |
| 4980003 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.80 | 76.0 | 4.69e-01 | 100.0% | 27.0% |
| 5025509 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.78 | 74.0 | 4.31e-01 | 100.0% | 17.8% |
| 3967714 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.52 | 45.0 | 4.23e-01 | 97.3% | 96.4% |
| 3518377 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.51 | 40.0 | 3.97e-01 | 92.0% | 78.3% |