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IMGVR_UViG_3300007222_000005-3300007222-Ga0104061_10055220

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300007222_000005-3300007222-Ga0104061_10055220 ↗
Kingdom:: archaea

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 121-280

PDB

Domain cluster: rep: FN436268.1__CBA17767.1__AHIS1_p055__00055__D102-271

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04233.20 best	Phage_Mu_F	47.0	5.40e-12	80.6%	98.2%

D2 medium residues 4-57

PDB

D3 medium residues 59-115

PDB

D4 medium residues 297-329_398-498

PDB

Domain cluster: rep: MK962753.1__QEG05497.1__JK32_00186__00186__D143-275

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03496.21 best	ADPrib_exo_Tox	30.0	4.60e-07	81.3%	39.5%

D5 medium residues 330-397

PDB

Domain cluster: representative

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5wtzA01	3.90.176.10	Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1	0.65	52.0	3.59e-01	100.0%	27.2%
1jmoA01	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.62	51.0	3.56e-01	92.6%	39.2%
2ip6A00	1.20.1440.140	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.61	45.0	4.17e-01	77.9%	66.7%
2vwaA00	1.20.58.1330	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein	0.60	47.0	4.12e-01	83.8%	65.7%
3rrkA02	1.20.1460.20	Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 ›	0.59	42.0	3.36e-01	77.9%	80.0%
3kflA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.59	46.0	3.53e-01	88.2%	69.1%
4akgA06	1.10.8.710	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain	0.58	42.0	3.62e-01	76.5%	90.7%
4a5dB00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.56	41.0	2.89e-01	79.4%	53.0%
3mxtA02	3.30.1300.10	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain	0.56	46.0	4.09e-01	92.6%	99.0%
2j9wB00	1.20.120.1130	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain	0.56	43.0	3.86e-01	85.3%	97.0%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.55	47.0	3.87e-01	98.5%	55.2%
2be4A02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.54	39.0	3.47e-01	76.5%	100.0%
1imvA02	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.53	45.0	3.34e-01	100.0%	82.0%
6ldkA01	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.53	43.0	3.34e-01	94.1%	68.6%
2ibdA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	42.0	3.44e-01	97.1%	49.0%
2vqxA02	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.51	42.0	3.35e-01	100.0%	75.4%
1op1A00	1.20.81.10	Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain	0.51	35.0	3.36e-01	73.5%	73.2%
2ckwA04	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.51	39.0	3.47e-01	86.8%	57.0%
1wx0A00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.50	42.0	3.05e-01	97.1%	90.0%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3527222	109.4.1.2038 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28491	0.59	45.0	2.49e-01	83.8%	5.2%
3409412	101.1.10.19 ↗	alpha arrays › HTH › HTH › Cyclin-like › ORC6_2nd	0.58	45.0	4.12e-01	100.0%	63.2%
4118834	140.1.1.6 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1,tRNA-synt_1g	0.57	46.0	3.25e-01	91.2%	45.5%
4943605	2006.1.1.18 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2	0.55	44.0	3.09e-01	92.6%	31.7%
3873692	101.1.1.21 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5	0.55	41.0	4.51e-01	80.9%	100.0%
3794543	101.35.1.0 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX	0.54	40.0	4.08e-01	80.9%	93.8%
3225063	101.1.2.518 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_DNAJC9	0.54	37.0	3.63e-01	77.9%	64.0%
4663861	5069.1.3.78 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MIS13	0.53	38.0	3.60e-01	75.0%	66.3%
4340859	2005.1.1.25 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1	0.53	44.0	2.77e-01	95.6%	17.8%
3495121	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.52	43.0	3.85e-01	98.5%	65.7%
4803705	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.52	35.0	3.62e-01	76.5%	74.2%
4108657	140.1.1.11 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1	0.51	40.0	3.51e-01	88.2%	70.0%
5069175	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.51	34.0	3.29e-01	77.9%	58.7%