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IMGVR_UViG_3300007345_007932-3300007345-Ga0070752_10133285
Arc-VirIMGVR_UViG_3300007345_007932-3300007345-Ga0070752_10133285
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-110
Domain cluster:
rep: IMGVR_UViG_3300021513_000102-3300021513-Ga0190315_10005481__D86-160
Pfam (6)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21984.3 best | DnaD_N | 27.0 | 5.80e-06 | 95.2% | 70.3% |
| PF05732.17 | RepL | 21.6 | 1.80e-04 | 95.2% | 40.8% |
| PF13545.13 | HTH_Crp_2 | 27.5 | 3.40e-06 | 78.3% | 54.3% |
| PF12802.14 | MarR_2 | 33.4 | 5.70e-08 | 77.1% | 83.3% |
| PF13730.13 | HTH_36 | 55.5 | 5.40e-15 | 67.5% | 98.2% |
| PF13412.13 | HTH_24 | 23.8 | 3.70e-05 | 36.1% | 60.4% |
D2
high
residues 151-206
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5zi7A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.72 | 61.0 | 4.49e-01 | 96.4% | 81.0% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.69 | 54.0 | 4.56e-01 | 87.5% | 56.7% |
| 6pmiF01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.65 | 54.0 | 4.87e-01 | 96.4% | 85.0% |
| 3ugjA02 | 1.10.8.750 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain | 0.59 | 48.0 | 4.68e-01 | 91.1% | 83.9% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 42.0 | 3.44e-01 | 78.6% | 68.4% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.59 | 46.0 | 4.26e-01 | 92.9% | 82.3% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.58 | 49.0 | 4.45e-01 | 98.2% | 77.2% |
| 1b6gA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 48.0 | 3.05e-01 | 100.0% | 83.9% |
| 2blfB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.56 | 38.0 | 3.75e-01 | 73.2% | 68.3% |
| 7px0A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.50 | 41.0 | 3.36e-01 | 100.0% | 55.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973355 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.86 | 64.0 | 5.50e-01 | 78.6% | 68.2% |
| 4498620 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.82 | 73.0 | 6.78e-01 | 100.0% | 85.7% |
| 3598713 | 541.1.1.0 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit | 0.74 | 51.0 | 5.65e-01 | 96.4% | 88.9% |
| 5084048 | 3831.1.1.15 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › HAAS | 0.68 | 51.0 | 4.60e-01 | 85.7% | 83.5% |
| 4964904 | 109.3.1.479 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF63 | 0.66 | 55.0 | 4.25e-01 | 100.0% | 69.7% |
| 3999776 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.61 | 46.0 | 3.54e-01 | 96.4% | 36.0% |
| 5082960 | 159.1.2.35 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › HAAS | 0.60 | 48.0 | 4.41e-01 | 91.1% | 97.3% |
| 4678853 | 185.1.2.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Protein HNS-dependent expression A HdeA › HdeA | 0.58 | 49.0 | 4.56e-01 | 100.0% | 82.4% |
| 3632120 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.57 | 44.0 | 3.95e-01 | 94.6% | 58.7% |
| 5025960 | 101.1.1.558 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7523 | 0.50 | 32.0 | 3.29e-01 | 71.4% | 65.5% |